Large language models increasingly operate as tool-using agents, where small format, argument, or function-call errors can invalidate otherwise plausible responses. We study inference-time feed-forward network (FFN) intervention for improving structured outputs without retraining model weights. Our project began with Orthogonal Residual Projection (ORP), a direction-changing repair attempt that revealed sensitive SwiGLU FFN intervention sites but often caused more harm than fixes. We therefore propose Amplitude Gating (AG), a non-destructive alternative that preserves pretrained FFN weight directions and modulates only activation magnitudes during generation. We define a fine-grained intervention system spanning P1/P2/P3 and branch-specific P1s/P2a/P2b sites, and introduce an evaluation protocol that separates combination-oracle headroom from fixed configurations and learned gates, enforces sample-level accounting, and uses task-aware metrics for binary and partial-credit datasets. Across Qwen3.5-9B, Qwen3-8B, and Qwen2.5-7B, AG is weakly positive in aggregate but strongest on tool-structured tasks. On Qwen3.5-9B, a category-level learned gate improves tool/structured/agentic performance from 38.66% to 42.92% (+4.27 percentage points), with Hermes function-call tasks reaching about +7.6 points. On Qwen3-8B, Hermes JSON mode improves by +11.36 points. Qwen2.5-7B retains oracle headroom but current learned gates fail to capture it, showing that deployment requires model- and category-specific routing. Comparisons of entropy AG with Newton-Schulz-windowed AG show that neither family is uniformly dominant. These results identify tool-structured inference as the most credible first target for safe FFN-level inference optimization, while prospective online validation and broader cross-model evaluation remain necessary.
Tool Calling and Structured Output are two core capabilities of modern Agent systems, yet their interaction under joint deployment conditions remains insufficiently understood. This paper reports a reproducible phenomenon observed in a production Agent system: when Tool Calling and JSON Schema constraints are simultaneously enabled, multiple open-weight models cease invoking tools despite maintaining high schema compliance. We refer to this behavior as Tool Suppression. Through controlled experiments across multiple model families and deployment settings, we consistently reproduce Tool Suppression under joint constraints, while tool execution and schema compliance remain functional when evaluated independently. Further analysis reveals that JSON Schema constraints are compiled into grammar-based token masks, causing tool-call tokens to become unreachable during decoding. This provides an implementation-level explanation for the observed behavior. To interpret the phenomenon, we formulate the Constraint Priority Inversion (CPI) hypothesis, which suggests that schema satisfaction may dominate action-selection behavior under multiple simultaneous constraints. We present CPI as a behavioral hypothesis consistent with the observed evidence rather than a verified internal mechanism. To mitigate the problem, we propose Transparent Two-Pass Execution, an inference-time strategy that decouples tool execution from schema-constrained response generation. Experimental results show that this approach restores tool invocation while preserving structured output guarantees without requiring model retraining. These findings suggest that evaluating tool use and structured output separately may overlook important reliability issues in production Agent systems. Code, data, and docs will be released at https://github.com/Fzsama/Constrain-Tax-26-06.git.