Traditional network models from network science, such as the Erdos-Renyi and configuration models, generate random networks that reproduce few selected topological properties observed in real-world networks. Deep graph generative models emerge as a data-driven approach, leveraging deep neural network architectures to learn complex structural distributions directly from real-world networks to generate more realistic synthetic networks. Because real social contact networks cannot be shared due to privacy risks, synthetic networks serve as an alternative for developing and evaluating epidemic mitigation strategies. In this work, we evaluate deep graph generative models as well as the configuration from a network science perspective by assessing both the topological similarity between generated and real-world networks and their utility in identifying effective node immunization strategies to sup- press epidemic/misinformation spreading. It is found that two deep graph generative models produce synthetic networks that closely resemble the structural properties of real-world networks, enabling them to identify effective immunization strategies.
Relational Deep Learning (RDL) models multi-tabular databases as temporal heterogeneous graphs to enable end-to-end representation learning. However, prevailing RDL evaluation practices rely on static, single-episode dataset snapshots, overlooking the continuous, time-evolving nature of real-world databases. Consequently, current RDL benchmarks fail to capture how model performance changes as new data accumulates over time. To address this limitation, we introduce an incremental, multi-episode evaluation and training paradigm to assess and improve the temporal robustness and adaptability of state-of-the-art RDL models. Using established large-scale datasets, we examine data evolution and model training dynamics, demonstrating that temporal concept drifts occur in the majority of predictive tasks. We present multiple incremental training regimes for fine-tuning the models and demonstrate that transfer learning is both feasible and highly effective in the RDL setting. Alongside a new temporal evaluation metric that prioritizes near-future accuracy, we show that our incrementally fine-tuned models consistently outperform the standard, expensive, from-scratch trained baselines.
Next-destination prediction in continuous-time dynamic graphs (CTDGs) commonly ranks an observed interaction against sampled negative destinations. The resulting score is conditional on both the negative distribution and the number of candidates chosen by the researcher. We show that a non-uniform negative distribution changes the Bayes-optimal ranking, while even a finite candidate set drawn uniformly can destabilize model rankings and measured module effects. Time-varying source-destination history membership and model operations that use this information directly transmit the sampler's influence to the evaluation score. We examine this mechanism using a factorial evaluation of repeated and new positives against seen and unseen negatives, a minimal scorer based solely on pair-history membership, and controlled representation interventions. Across six models on LastFM, MOOC, Reddit, and Wikipedia, at least one model pair changes relative order between the expected Uniform-20 metric and the full catalog on three of the four datasets. The measured effect of the same module also changes in magnitude and direction with the candidate-set size and training objective. These results establish that model-superiority and ablation conclusions from sampled-negative benchmarks are conditional on the stated candidate configuration. All-entity ranking evaluates every destination in a fixed catalog, eliminating negative-selection freedom and sampling variation while retaining the original CTDG scorer. We therefore recommend all-entity ranking as the primary evidence for architecture comparisons on CTDG benchmarks with an enumerable, fixed destination catalog.
A Knowledge Graph (KG) represents facts as structured triples and is widely used to organize relational knowledge across diverse domains. Just as textual information ranges from words and sentences to complete documents, KG information can be interpreted at multiple levels, from entities, relations, and triples to subgraphs and entire KGs. However, existing KG embedding methods mainly focus on entities, relations, and triples, leaving graph-level semantics largely unaddressed. Conventional graph-level methods, which typically compare graphs based on structural patterns, are also insufficient because structural similarity alone cannot guarantee semantic similarity between KGs. To evaluate how well different methods capture such graph-level semantic information, we study graph-to-graph semantic similarity, which determines whether a pair of KGs represents semantically corresponding underlying information. To obtain reliable ground-truth correspondences, we construct a semantic matching dataset by modifying text documents, extracting KGs from both original and modified documents, and transferring their known correspondences to KG pairs. We compare text-based, structure-based, and KG embedding-based approaches on each dataset. For the KG embedding-based approach, we introduce two scoring functions: \textit{EmbPairSim}, which uses maximal pairwise entity similarity, and \textit{AvgEmbSim}, which uses a frequency-weighted centroid. Experiments on WikiText-2 and CC-News show that \textit{EmbPairSim} achieves up to 5.3 pp higher MRR than Sentence-BERT while using substantially fewer parameters. These results suggest that KGE representations can serve as compact and effective signals for graph-to-graph semantic similarity in KGs. Our code is available at https://github.com/SeungRyeolBaek/KG-to-KG-Semantic-Similarity.
Due to the wide use of graph-structured data in different fields of industry and science, the development of Graph Foundation Models (GFMs) has recently attracted a lot of attention. While many different types of models are called GFMs, particular interest has been paid to GFMs designed for node property prediction tasks, which is one of the most popular settings in Graph ML with lots of real-world applications from fraud detection in financial and social networks to recommendation systems for e-commerce and user-generated content platforms. While a number of GFMs for this task have been recently proposed, the field has not converged to a unified evaluation setting, and different works evaluate their models in widely different ways, preventing reliable comparison of GFMs with each other and with other types of models. In this work, we conduct a fair and rigorous reevaluation of 9 recent GFMs for node property prediction, comparing them to strong Graph Neural Network (GNN) baselines. We find that, among these GFMs, only the most recent ones based on the Prior-data Fitted Networks paradigm outperform well-tuned GNNs in predictive performance, although at a higher inference cost.
Knowledge graph completion (KGC) models are commonly evaluated using rank-based metrics such as MRR and Hits@K, despite different users often requiring different evaluation perspectives. In this demo, we present PROBE-Web, an interactive system for probing diverse evaluation landscapes for KGC models. PROBE-Web enables users to flexibly evaluate KGC models by adjusting two critical perspectives: (P1) predictive sharpness and (P2) popularity-bias robustness. Through a user-friendly GUI, users easily evaluate multiple KGC models and analyze their strengths and weaknesses. PROBE-Web provides four key functionalities: (1) conventional evaluation toolkit, (2) flexible perspective-aware evaluation, (3) explainable case studies, and (4) evaluation landscape exploration. We believe that PROBE-Web can help users better understand KGC models aligning with their objectives.
Current evaluation practices in relational learning rely heavily on flat leaderboards that average performance across heterogeneous datasets, implicitly assuming a uniform underlying structure. We show that this assumption introduces systematic bias: it obscures geometry-dependent performance variations and can lead to misleading conclusions about model generalization. In this work, we identify intrinsic geometry as a key latent factor governing model effectiveness. We demonstrate that conventional aggregated metrics mask critical performance trade-offs that only become visible when datasets are stratified by their geometric properties. To address this issue, we introduce a curvature-stratified evaluation framework that partitions datasets into positive, negative, and near-zero curvature regimes. Our benchmark evaluates 18 representative models including Graph Convolutional Networks (GCNs), Graph Foundation Models (GFMs), and tabular learning methods across 14 datasets. We find that model rankings are highly stable within each curvature regime but shift significantly across regimes, indicating that performance is fundamentally geometry-dependent rather than universally transferable. Notably, we identify regimes where GFMs offer diminishing returns compared to geometry-aligned GNNs. Based on these findings, we propose a geometry-aware evaluation protocol that yields more reliable and interpretable comparisons than standard aggregated benchmarks. We release all code, curvature-stratified dataset splits, and evaluation tools to support reproducible and rigorous assessment of future relational learning methods. Code and datasets are provided in our project homepage: https://sirbabbage.github.io/CurvBench_HOME/.