Federated learning (FL) lets institutions train a shared model without exchanging data, and Low-Rank Adaptation (LoRA) makes this practical at scale by communicating only compact low-rank updates. Biomedical imaging is a compelling setting for this combination: patient data are archived behind privacy regulations, and institutions differ widely in scanners, protocols, and compute. Such heterogeneity raises the question of how federated LoRA updates should be aggregated, increasingly pressing as multimodal vision-language models become central to medical image analysis. We benchmark federated Parameter-efficient fine-tuning (PEFT) of BiomedCLIP for chest radiograph classification across four public cohorts on three continents (USA, Vietnam, Spain). Federated LoRA adaptation improves shared-class AUC on all four cohorts over the unadapted BiomedCLIP backbone (mean 0.687 to 0.802), showing that the gains come from federated adaptation rather than from the pretrained model's zero-shot ability. Relative to isolated single-cohort training, federation improves the weaker cohorts while largely preserving the strongest and approaches a centralized reference (0.812) that pools all data. The singular value decomposition (SVD)-based product-space aggregation introduced by FlexLoRA is essential to this gain (naive factor averaging drops mean AUC by 0.097), whereas a drift-correcting optimizer (FedProx) shows no benefit over FedAvg in our single-seed runs, consistent with LoRA's low-rank updates already limiting client drift. Biomedical vision-language models can thus be adapted collaboratively across heterogeneous, geographically distributed institutions without centralizing data.
Diabetic retinopathy (DR) is a major cause of preventable blindness, creating a need for accurate and trustworthy automated screening. This study investigates an explainable DR classification framework using vision foundation models and multiple transfer learning strategies. Three backbones, DINOv2, CLIP, and Vision Transformer (ViT), were evaluated using full fine-tuning, linear probing, and Low-Rank Adaptation (LoRA). Models were trained and internally evaluated on the ODIR dataset and externally evaluated on APTOS to assess generalization. DINOv2-LoRA achieved the highest internal AUROC of 0.758, while DINOv2 full fine-tuning and ViT full fine-tuning achieved the highest external AUROC of 0.920. Calibration was further assessed using reliability analysis after isotonic regression. For explainability, Grad-CAM and HiResCAM were evaluated against expert-annotated lesion masks from the IDRiD dataset using Dice, Intersection over Union (IoU), and Pointing Game metrics. The results demonstrate that foundation models, particularly DINOv2, can provide strong predictive performance, while LoRA offers a parameter-efficient alternative to full fine-tuning. Quantitative evaluation of explanation maps further supports the assessment of whether model attention corresponds to clinically relevant retinal lesions.
Dynamic contrast-enhanced breast MRI is central to cancer diagnosis and monitoring, but requires gadolinium-based contrast agents. In this work, we address pre-to-post contrast breast MRI synthesis for the MAMA-SYNTH challenge. We propose MAMA-FLUX.2, a conditional latent flow-matching approach based on FLUX.2-Klein-4B. The pre-contrast image is encoded as spatial conditioning, while the model predicts the flow field associated with the post-contrast target latent. To adapt the pretrained model efficiently, we use LoRA fine-tuning and introduce a regional training objective combining global flow matching, tumor-region supervision, and stable foreground regularization. We further investigate LoRA rank, intensity windowing, and regional loss weights on axial slices, prioritizing clinically relevant tumor-focused metrics. Our ablation study shows that moderate tumor and stable-foreground weighting improves the trade-off between image fidelity and tumor-region accuracy. The final model achieves the best overall balance with LoRA rank/$α=64/64$, $\mathrm{MHA}_{\max}=25$, $λ_{\mathrm{tumor}}=0.25$, and $λ_{\mathrm{stable}}=0.1$. These results demonstrate that compact pretrained rectified-flow transformers can be adapted for contrast-enhanced MRI synthesis using parameter-efficient fine-tuning and task-aware regional losses.
Longitudinal electronic health records (EHRs) document patients' sequences of clinical visits over time, preserving the temporal evolution of disease progression and care delivery. However, real longitudinal EHRs are difficult to access because they contain large amounts of fine-grained, patient-specific information. Synthetic EHR generation therefore provides a valuable approach for preserving the statistical patterns and clinical structure of patient visit trajectories, enabling broader modeling and analysis when real records are limited. Although recent generative models have made progress in producing future visit sequences, they remain limited in explicitly integrating inter-visit irregular temporal evolution and intra-visit clinical event structures in EHRs, leading to clinically inconsistent and temporally unrealistic visit sequences. In this work, we propose SynEHR, a lightweight adaptive LLM-based framework for longitudinal EHR synthesis. There are two novel designs in SynEHR, i.e., a Temporal State Conditioning Module captures irregular temporal states across visits and a Temporal-Relational Adaptation Module combines these states with patient history to dynamically construct patient-specific relational representations. SynEHR then builds on a parameter-efficient LoRA-adapted language-model generator with next-visit generation capability to train the two modules for temporally and clinically informed generation. Extensive experiments on real-world EHR datasets across fidelity, privacy, and downstream utility evaluations demonstrate that SynEHR outperforms state-of-the-art models by generating more clinically coherent and temporally faithful longitudinal EHR data.
Marko Haralović, Sounic Akkaraju, Carlo Baretta +2cs.CV
Foundation models for medical image segmentation, like prompt-based MedSAM, generalize well across domains and modalities, often in zero or few-shot setups. However, their performance depends on the quality of prompts and the adaptation of the models to custom datasets. This work systematically examines how MedSAM generalizes across diverse medical imaging benchmarks, with six adaptation strategies: full-model and encoder-only LoRA, shallow and deep visual prompt tuning (VPT), and decoder-only and full fine-tuning. Models are trained on the International Skin Imaging Collaboration Challenge (ISIC 2018) dataset and evaluated under clean and increasingly noisy prompts on IN and Out-of-Distribution (OOD) datasets: close-OOD PH2 (dermoscopy), far-OOD BUSI (Breast Ultrasound Images Dataset) and CBIS-DDSM (Curated Breast Imaging Subset of the Digital Database for Screening Mammography). We show that adaptation improves performance on IN and close-OOD data but often reduces performance on far-OOD data. Full fine-tuning provides the best tradeoff, while encoder-only LoRA is the strongest parameter-efficient alternative, outperforming standard LoRA and VPT under far-OOD shifts. Using Centered Kernel Alignment (CKA), we show that far-OOD degradation is strongly associated with drift in decoder representations, whereas encoder similarity alone does not explain robustness. This suggests encoder-only LoRA provides stronger robustness than standard LoRA by adapting the encoder to distribution shift in visual features, while preserving the decoder pathway. We further show that random 0-100 pixel jitter on prompts produces more robust and better performing models. We thus conclude that robust MedSAM adaptation requires the combined consideration of prompt noise exposure, domain shift, and representation preservation. We release our code: https://github.com/ImSounic/medsam-vpt
Xiaotong Zhang, Mingyue Cui, Qing Cao +1eess.IV cs.CV
Left ventricular ejection fraction (LVEF) estimation (Task 1), global longitu-dinal strain (GLS)-based dysfunction classification (Task 2), and early cardi-otoxicity prediction (Task 3) provide complementary information for cardio-oncology assessment. LVEF reflects macroscopic ventricular volume chang-es as the clinical standard, whereas GLS captures subtle myocardial defor-mation, indicating subclinical cardiotoxicity before overt LVEF decline. Fur-thermore, predicting cardiotoxicity from baseline echocardiography prior to treatment enables preventive interventions at an early stage. To address these three tasks, we employ a DINOv2-based framework with task-specific adap-tation and prediction heads. Built upon a frozen foundation encoder, the framework incorporates parameter-efficient Low-Rank Adaptation (LoRA) and temporal aggregation to learn task-specialized representations, ensuring robust generalization. Crucially, during inference, it operates in a fully cycle-detection-free and phase-free manner, requiring neither cardiac cycle seg-mentation nor explicit End-Diastolic/End-Systolic (ED/ES) annotations. Ad-ditionally, we introduce an ED/ES-guided 2D/3D hybrid multi-view regres-sion model specifically to optimize Task 1. On a patient-level split containing 1,203 training videos from 237 patients and 300 validation videos from 59 independent patients, the DINOv2-based framework achieved a mean abso-lute error (MAE) of 5.03% for Task 1, an AUC-ROC of 76.48% for Task 2, and an AUC-ROC of 70.26% for Task 3. For Task 1, the specialized ED/ES-guided model further improves performance, achieving an MAE of 4.64%. This framework demonstrates the effectiveness of foundation model repre-sentations across diverse cardio-oncology tasks and the additional benefit of physiology-guided modeling for accurate LVEF estimation.
Medical image classification often suffers from class imbalance due to the inherent disparities in disease incidence. Existing approaches, such as class resampling and loss reweighting, mainly improve learning within the observed feature distribution, but do not explicitly enlarge the latent support region of tail classes. As a result, tail-class representations remain overly compact and are easily encroached upon by head classes, leading to biased decision boundaries. In this work, we propose Recurrent Contrastive Learning (RCL) for imbalanced medical image classification. RCL progressively expands the support region of tail classes by recurrently reusing historical feature states across training phases. Specifically, we adopt DINOv3 with LoRA adapters as the backbone to provide robust feature embeddings. We then devise a Temporal Memory Queue (TMQ) to preserve corpus-level features across training phases and provide diversified global references for contrastive learning. Based on TMQ, we construct Temporal Anchors (TARs) to form an anchor field around tail classes. This field enlarges the support region of tail classes, suppresses head-class encroachment, and improves inter-class separation. Extensive experiments on three imbalanced medical datasets demonstrate that RCL achieves consistent improvements over strong baselines. The code is available at https://github.com/dndins/RCL.
Efficient surgical segmentation empowers clinical diagnosis, intraoperative monitoring, and downstream robotic pipelines for reconstruction and simulation. Although prompt-driven foundation models like Segment Anything Model 3 (SAM3) achieve strong segmentation performance on natural images, surgical data exhibits domain gaps against its pre-training data, resulting in degraded segmentation accuracy. Furthermore, existing medical SAM methods require full-parameter fine-tuning, incurring heavy computational consumption and low efficiency. To address these limitations, this work proposes a parameter-efficient Low-Rank Adaptation (LoRA) adaptation of SAM3 for surgical concept segmentation. We inject low-rank adapters into the prompt encoder, detector and tracker while fully freezing the vision backbone, which only optimizes 0.98% of the total model parameters and supports training on a single consumer GPU. Comprehensive experiments demonstrate that our method consistently outperforms zero-shot SAM3 and other mainstream baselines, and the generated segmentation results can be directly deployed to support downstream robotic surgical scene reconstruction and physical simulation pipelines.
Protein language models learn transferable sequence representations. However, because they primarily model contextual dependencies along amino-acid sequences, their training objectives do not explicitly constrain the model to learn three-dimensional residue contacts formed after folding . Here, we introduce LC-SEPLM (Long-range Contact-supervised ESM Protein Language Model), which adapts ESM2 with LoRA and long-range residue-pair contact supervision while retaining sequence-only downstream inference. Pair-specific queries use cross-attention over the complete sequence to extract global sequence context associated with long-range spatial contacts. To expose the model to diverse structural information, we trained LC-SEPLM on 500,000 AlphaFold Swiss-Prot proteins. In downstream evaluation, LC-SEPLM improved all eight protein-level tasks relative to ESM2. The largest gain occurred in remote-homology recognition, where macro-F1 increased from 0.6122 to 0.6769 (+0.0647, or 6.47 percentage points). On the official ESM-S EC benchmark, LC-SEPLM also outperformed ESM-S with a maximum absolute gain of 0.1771. These results support residue-pair contact supervision as a bounded route for introducing structural information into protein sequence representations while preserving sequence-only inference.
Large vision-language models (LVLMs) have achieved strong performance across many medical imaging tasks, yet their application to ultrasound remains limited due to its inherent complexity and variability. In this work, we revisit what is truly needed to enable real-world ultrasound understanding. Instead of introducing complex architectures or elaborate training strategies, we show that data scale and clinically faithful data alignment are the key factors. We construct a large-scale dataset of 1.5M real-world ultrasound examinations, containing 17.7M images, multi-organ coverage, and paired uncurated clinical reports. Crucially, we organize the data at the examination level, aligning multiple images with their corresponding reports to reflect real clinical workflows. We then fine-tune a standard LVLM using low-rank adaptation (LoRA) on this dataset without task-specific modifications. Surprisingly, this simple recipe already leads to strong performance across diverse ultrasound understanding tasks, outperforming prior methods designed with more complex pipelines. Beyond these results, we present model and data scaling analyses that provide insights into the role of scale in ultrasound LVLMs.
Medical multiple-choice question answering requires parameter-efficient adaptation across heterogeneous knowledge domains and reasoning operations. A medication question, a diagnostic decision, a public-health item, and a nursing-action item may require different low-rank updates, while some recall items should preserve the base model's representation with only mild adapter intervention. We propose BiRG-LoRA, a single-adapter rank-gated LoRA method for medical question answering. BiRG-LoRA keeps one LoRA module per target layer but makes its rank dimension input-conditioned: for each question, a biaxial gate combines hidden semantic evidence with specialty/profession priors, clinical-operation priors, and their interaction to select a sparse top-$k$ subset of rank atoms. A scalar injection coefficient further controls the strength of the selected adapter update. Under a matched Qwen3-8B CMB-source protocol, BiRG-LoRA achieves the highest four-benchmark macro-average accuracy among trainable PEFT baselines and matched routing controls: 69.31% averaged over CMB, CMExam, MedQA, and MedMCQA. It improves over MoELoRA by 0.89 percentage points while using 28.1% fewer trainable parameters; a paired, benchmark-stratified bootstrap over final predictions gives a 95% confidence interval of [0.42, 1.37] for this macro-average gain. Basic controls show that BiRG-LoRA also improves over vanilla LoRA r16 and active-rank-matched LoRA r4 by 0.83 macro points, and an evaluation-time weak-axis perturbation check suggests that performance is not brittle to moderate tag noise. The results support a bounded claim: clinically structured rank allocation improves cross-benchmark medical QA under a matched single-seed protocol, while training-seed variance remains future work.
Alessandro Di Matteo, Sara Moccia, Giuseppe Rizzo +5cs.LG cs.AI cs.CV
Accurate localization of the corpus callosum (CC) in fetal ultrasound (US) images is crucial for the early identification of neurodevelopmental abnormalities. However, this task remains highly challenging due to the intrinsic limitations of US imaging, including low contrast, speckle noise, and the considerable anatomical variability of the CC. We propose FedCC, a federated learning (FL)-based framework for CC localization in fetal US images, specifically designed for realistic multi-center and resource-constrained clinical settings without requiring data sharing. The framework integrates a frozen DINOv2 backbone with a lightweight YOLO-based detection head. To enable parameter-efficient adaptation, Low-Rank Adaptation (LoRA) modules are incorporated, allowing only a small subset of parameters to be optimized and exchanged among clients. This strategy substantially reduces both computational and communication overhead, making the framework suitable for low-resource environments. The proposed approach was evaluated on a multi-center dataset comprising 10,970 ultrasound frames acquired from 58 pregnant women during routine neurosonographic examinations across three clinical sites using heterogeneous imaging devices. The proposed framework achieved strong performance in the federated setting. In particular, the combination of DINOv2 and LoRA under the FedAvg strategy achieved an average mAP@50 of 0.857 and an F1-score of 0.803, outperforming both full fine-tuning and encoder-freezing baselines. Notably, the proposed approach reduced the number of trainable parameters to 2.9M compared with 24.4M in full fine-tuning, corresponding to an approximately 8.5$\times$ reduction in communication cost. These findings represent a promising step toward scalable, privacy-preserving, and clinically deployable AI systems for fetal neurosonography.
Four-dimensional computed tomography (4DCT) captures the full respiratory cycle of thoracic anatomy, yet current Internal Target Volume contouring workflows process each phase in isolation, discarding temporal coherence and leaving contours vulnerable to phase-specific artifacts. We present a lightweight framework that applies parameter-efficient fine-tuning to the Segment Anything Model 3 (SAM 3) via low-rank adaptation (LoRA) to align its text-prompted segmentation with the medical domain using only seven annotated 3D CT volumes. Furthermore, the framework incorporates a hard negative mining strategy to improve boundary discrimination in low-contrast thoracic regions. At inference, phase-wise predictions are refined through phase-coherent temporal filtering and spatial connectivity analysis. Since respiratory motion is continuous and periodic, genuine anatomy appears in contiguous blocks of phases, whereas transient artifacts appear sporadically and are thus effectively suppressed. Experiments on pulmonary and cardiac structures yield median Dice scores of 0.968 and 0.910 with 95th-percentile Hausdorff distances of 0.998 mm and 2.931 mm, respectively. The proposed framework effectively eliminates the severe false-positive predictions inherent in the zero-shot inference of the unadapted SAM 3. With only seven annotated volumes, the framework retains over 95% of full-data accuracy, and the entire pipeline is trainable on a single consumer-grade GPU, demonstrating a scalable, data-efficient solution for adaptive radiotherapy.
Clinical diagnosis requires flexible use of multiple reasoning paradigms under incomplete patient information. Existing LLM-based medical agents show strong medical reasoning ability, but single-paradigm or naively mixed dialogue supervision makes these paradigms difficult to learn without interference. We propose \textbf{PACT} (Periodic Anchor Consensus Training), a framework that couples supervised multi-paradigm dialogue synthesis with consensus-based Branch training. At the data level, \textbf{DPS} (Doctor-Patient-Supervisor) uses complete electronic medical records (EMRs) for quality control while keeping the doctor agent restricted to patient-visible information. This produces validated dialogues under four diagnostic reasoning paradigms without leaking hidden clinical answers. At the training level, PACT trains one paradigm-specific LoRA Branch per paradigm and periodically aggregates Branches into a shared Anchor through sign consensus. We further construct a dynamic multi-turn Chinese medical diagnosis benchmark for interactive consultation. Experiments show that PACT achieves state-of-the-art performance among compared proprietary, medical-specialized, and task-adapted baselines on diagnostic outcome and consultation-process metrics.