Federated LoRA Adaptation of BiomedCLIP Across Four International Chest X-Ray Cohorts

Federated learning (FL) lets institutions train a shared model without exchanging data, and Low-Rank Adaptation (LoRA) makes this practical at scale by communicating only compact low-rank updates. Biomedical imaging is a compelling setting for this combination: patient data are archived behind privacy regulations, and institutions differ widely in scanners, protocols, and compute. Such heterogeneity raises the question of how federated LoRA updates should be aggregated, increasingly pressing as multimodal vision-language models become central to medical image analysis. We benchmark federated Parameter-efficient fine-tuning (PEFT) of BiomedCLIP for chest radiograph classification across four public cohorts on three continents (USA, Vietnam, Spain). Federated LoRA adaptation improves shared-class AUC on all four cohorts over the unadapted BiomedCLIP backbone (mean 0.687 to 0.802), showing that the gains come from federated adaptation rather than from the pretrained model's zero-shot ability. Relative to isolated single-cohort training, federation improves the weaker cohorts while largely preserving the strongest and approaches a centralized reference (0.812) that pools all data. The singular value decomposition (SVD)-based product-space aggregation introduced by FlexLoRA is essential to this gain (naive factor averaging drops mean AUC by 0.097), whereas a drift-correcting optimizer (FedProx) shows no benefit over FedAvg in our single-seed runs, consistent with LoRA's low-rank updates already limiting client drift. Biomedical vision-language models can thus be adapted collaboratively across heterogeneous, geographically distributed institutions without centralizing data.

CheXGround: Anatomical Region Tokens for Grounded Longitudinal Chest X-ray Interpretation

Recent radiology multi-modal language models have made substantial progress in chest X-ray report generation, visual question answering, and temporal reasoning. While longitudinal chest X-ray interpretation compares sequential examinations to describe change, visual grounding aims to connect clinical language with localized image evidence. Although longitudinal modeling and visual grounding have each advanced radiology language models, how localized visual evidence can support longitudinal interpretation remains under-explored. We introduce CheXGround, a region-grounded longitudinal chest X-ray language model that represents paired studies through corresponding anatomical regions. CheXGround extracts anatomical regions from current and prior radiographs, encodes them as temporally enhanced Region-of-Interest (ROI) tokens, and combines them with global temporal image context during generation. To connect these region tokens with clinical text, we propose Temporal Region--Phrase Alignment, a pretraining objective that aligns temporal anatomical representations with localized report phrases. We evaluate CheXGround on single-study and longitudinal Visual Question Answering (VQA), longitudinal findings generation, temporal grounded VQA, and anatomical grounding. Across these tasks, CheXGround improves clinical language quality, temporal reasoning, and localization accuracy over recent baselines. Our results suggest that organizing longitudinal evidence at the anatomical level is a strong representation for grounded radiology language modeling. Project page: https://adonaydem.github.io/chexground-website

Text-Guided Diffusion-Based Adversarial Attacks on Chest X-Ray Images

As artificial intelligence is increasingly integrated into chest X-ray (CXR) interpretation, triage, and clinical decision support, understanding its vulnerability to adversarial manipulation is critical for safe deployment. Existing robustness evaluations, however, predominantly rely on pixel-space attacks that introduce numerically constrained perturbations but may not represent plausible radiographic variation. This limitation is particularly important in multi-disease CXR classification, where models simultaneously evaluate multiple overlapping pathologies and adversarial failures may alter several diagnostic predictions. We propose a text-guided diffusion-based adversarial framework that optimizes learnable text conditioning while keeping the diffusion generator and target classifier frozen, enabling adversarial generation through a learned image prior rather than direct pixel manipulation. We evaluate the framework across multiple classifier architectures in both binary atelectasis and multi-disease CXR classification and compare it with FGSM, PGD, and Carlini-Wagner attacks. Our approach consistently produced the greatest degradation in classifier performance, reducing AUROC to 0.3885-0.5646 in binary classification and 0.4441-0.4878 in the multi-disease setting, while achieving superior image fidelity (SSIM 0.9080, LPIPS 0.1670, FID 51.23). Importantly, clinician interpretation remained unchanged for 95.9% of binary and 73.8% of multi-disease adversarial images despite substantial changes in model predictions. These findings reveal a clinically important discrepancy between human and machine interpretation and demonstrate the need to extend medical AI robustness evaluation beyond conventional pixel-space attacks toward generative threat models that can expose failures under visually and clinically plausible image variations.

Example-based Robust Abnormality Detection with Minimal Annotations using Exemplar Med-DETR

Reducing annotation requirements remains a key challenge in developing robust medical object detectors. To address this, Vision-Language (VL) object detection methods leverage grounding text information to enable powerful zero-shot and few-shot object detectors in the natural image domain [1, 2, 3, 4]. However, transferring these methods to the medical domain is challenging due to the absence of comparable quality and quantity of the grounding data. Regardless, significant contextual and non-imaging information exists in medical images that remains underutilized. Few-shot learning (FSL) techniques partially address this limitation but struggle to general ize to unseen medical findings and require extensive retraining when new findings are introduced [5, 6]. To overcome these challenges, we extend our prior EM-DETR framework [7] and introduce a scalable FS detection approach designed for efficient abnormality detection in Chest X-Ray (CXR) images under minimal supervision. The proposed architecture incorporates exemplar-based feature generation and domain-aware contrastive optimization, enabling effective adaptation to novel disease findings without exhaustive retraining. Our method achieves near state-of-the-art (SOTA) detection performance using less than 10% of the annotated data, demonstrating its potential for practical, annotation-efficient clinical deployment across both proprietary and public CXR datasets.

MC-CXR: A Multi-Context Chest X-ray Benchmark for Context-Induced Disruption in Vision-Language Models

Vision-language models (VLMs) are increasingly used in clinical pipelines where a chest X-ray is interpreted alongside retrieved reports, preliminary notes, or prior imaging. Existing benchmarks measure whether models answer correctly in isolation, but not whether they preserve a correct image-only decision when plausible context conflicts with the image. We introduce Multi-Context Chest X-ray (MC-CXR), a benchmark of 240 cases expanded into 2,522 instances that isolates context-induced disruption through paired perturbation. Each case fixes the current image and target finding while presenting matched reliable and misleading context across text and prior CXR, with visual overlays where available. MC-CXR defines three task families and two paired metrics, the switch-to-wrong rate and the context-aligned error rate. We evaluate ten VLMs spanning open-source general, medical-domain, and closed-source systems. Image-only accuracy is necessary but insufficient. Mean switch rates range from 45.6-78.1% across misleading textual sources and 35.7-61.7% across misleading visual sources. Among switched predictions, 74.6% align with the misleading label for text versus 17.6% for visual context, a 57.0-point gap (95% CI 50.9-62.8). This text-visual asymmetry is observed under the standardized direct-answer protocol. The dataset is available on PhysioNet.

Extending the Horizon of Early Diagnosis: Lung Cancer Prediction with Vision Transformers

Lung cancer remains a leading cause of cancer-related mortality worldwide, and early diagnosis is critical for improving survival. However, early-stage malignancies can be subtle on chest X-rays, creating challenges for radiologists. This study evaluates Vision Transformers (ViTs) for predicting lung cancer one to two years before clinical diagnosis. We analyzed 259,361 chest X-rays from 91,020 imaging studies at the Jamaica Plains VA Hospital in Boston, MA. The dataset showed extreme class imbalance, approximately 1:150 cancer to non-cancer, which was addressed using hybrid under- and over-sampling and class-weighted loss optimization. Three ViT configurations were evaluated: a model trained from scratch, an ImageNet-pretrained model, and a Corona-pretrained model fine-tuned on the lung cancer dataset. Transfer learning improved performance, with pretrained models exceeding the scratch baseline by 6-10 percentage points in AUC and about 10-12 percent in balanced accuracy. ImageNet-pretrained models showed the most stable overall performance, while Corona-pretrained models achieved higher sensitivity in some settings but greater variability. Moderate resampling ratios, including 1:1 undersampling and 1.5:2 oversampling, provided favorable trade-offs between sensitivity, precision, and computational efficiency, reducing runtime by up to 70 percent without major performance loss. These findings demonstrate the potential of ViTs for early lung cancer risk prediction from routine chest X-rays. Although performance remains below clinical deployment thresholds, the results support further development of ViT-based triage systems to flag high-risk patients for earlier evaluation.

Subgroup performance analysis of adaptation strategies for chest X-ray foundation models

Foundation models are increasingly adapted for downstream medical imaging tasks, yet the influence of the chosen adaptation strategy on subgroup fairness remains poorly understood. We investigate how three parameter-efficient adaptation techniques, including linear heads on the raw CLS token, an MLP, and an attention-pooling module over multi-layer patch features, affect both pathology classification performance and subgroup disparities when applied to the frozen Rad-DINO chest X-ray encoder. Using MIMIC-CXR, we evaluate eight pathologies across race, sex, and imaging-view subgroups on a prevalence-preserving, demographically balanced test set, and additionally probe how strongly each adapter encodes protected attributes. We find that attention pooling achieves the strongest overall discriminative performance and encodes attributes, particularly race, most strongly, but that improved overall performance does not consistently reduce subgroup disparities. Notably, stronger attribute encoding did not correspond to larger disparities: early network layers encoded race most weakly yet produced the largest subgroup performance gaps. Exploring different attention-pooling layer combinations further revealed no consistent relationship between the layers pooled, attribute encoding strength, and subgroup fairness. Our results indicate that richer, more expressive representations can improve accuracy while leaving fairness implications task-dependent and unpredictable, which must be assessed directly and per-task rather than inferred from encoding strength or overall performance alone.

Few-Shot Cross-Dataset Adaptation for Tuberculosis Detection Using DenseNet

Tuberculosis (TB) is one of the most common and dangerous bacterial ailments. Every year, it causes a large number of deaths worldwide. Although many deep learning models can detect tuberculosis from chest X-rays quite accurately, severe domain shift across datasets makes the task challenging. Different imaging protocols, patient demographics, and equipment across domains make the task of generalization difficult. In real-world settings, a model may perform well on one dataset but show a noticeable drop in performance when tested on another. In this work, we address this domain adaptation challenge through a few-shot scaling study. A controlled cross-dataset evaluation is presented in this paper using TBX11K as the source domain and the Mendeley TB dataset as the target domain. It is investigated how varying the number of target samples affects model performance under three training regimes: frozen backbone adaptation, full fine-tuning of a source-pretrained DenseNet121 model, and training from scratch. The results indicate that the model can perform well even with limited data and can achieve 98.36\% accuracy with just 75 labeled samples per class. The adaptation curves demonstrate how fine-tuning effectively mitigates domain shift. These findings establish full fine-tuning of pretrained models as a highly effective and practical strategy for mitigating domain shift in low-resource clinical deployment scenarios.

Look What the Probes Dragged In! Real-World Chest X-ray Shortcuts in MedCLIP

Vision-language models, such as contrastive language-image pre-training (CLIP)-based approaches, have reached state-of-the-art (SOTA) results in medical artificial intelligence. However, recent work reveals that CLIP-based models remain vulnerable to shortcuts. We investigate how real-world shortcuts manifest across different layers of the medical CLIP-based model, MedCLIP, and its vision encoder, a frozen ResNet-50. We attach 17 linear classification probes to the intermediate layers of the ResNet-50 and train them on three different dataset configurations and targets: NIH-CXR14 (pneumothorax) and PadChest (cardiomegaly and pneumothorax). This setup allows us to observe model behaviour during evaluation using subgroup-based calibration and layer-wise confidence curves. We find that the final linear probes achieve a high AUROC but poor calibration in the models. The layer-wise confidence analyses suggest that shortcuts emerge at different depths. Patterns consistent with localised shortcuts, such as drains, appear at later layers, while patterns consistent with diffuse shortcuts, such as scanner-specific noise patterns, emerge earlier, aligning with previous work. Finally, we conduct a manual analysis of the images, which reveals data quality issues in both NIH-CXR14 and PadChest. Our findings underscore that even SOTA models remain vulnerable to shortcuts, and the need for high-quality and well-annotated datasets to draw solid conclusions. Code can be found on our GitHub: https://github.com/nikodice4/MedCLIP_shortcuts.

When Repository Labels Are Not Image-Level Truth: A Supervision Auditing Framework for Chest Radiograph AI

Public chest X-ray repositories are widely used to train medical AI systems, yet their labels are typically extracted from radiology reports rather than verified directly on images. As a result, repository labels are often treated as image-level ground truth without validating whether they reflect what is actually visible in the radiograph. We introduce Repository Supervision Auditing (RSA), a framework that evaluates repository-derived labels against expert image-level annotations before model development. Using cardiomegaly in MIMIC-CXR as a case study, RSA compares repository labels with radiologist-reviewed image annotations, characterizes disagreement sources, and builds a curated cohort for deployment-oriented evaluation. Repository-derived cardiomegaly labels showed near-zero agreement with expert image-level assessment, identifying only 1% of expert-confirmed cases. Most discrepancies resulted from non-mention rather than explicit report negation, with expert-confirmed cardiomegaly identified in nearly half of studies assigned a repository-derived No Finding label. Using the resulting expert-curated cohort, a DenseNet121 model achieved a test ROC-AUC of 0.853. These findings show that repository labels may not reliably represent image-level truth and highlight supervision auditing as a critical step for developing trustworthy medical imaging AI.

C$^2$A: Coupling Spatial Evidence with Clinical Priors via Co-occurrence Aware Class Attention for Multi-Label Chest X-Ray Classification

Thoracic pathologies rarely occur in isolation, yet standard multi-label classifiers rely on shared global descriptors, discarding \emph{where} findings lie and \emph{how} they co-occur. We propose \textbf{C$\mathbf{^2}$A} (Co-occurrence Aware Class Attention), a classification head that explicitly couples spatial evidence with clinical priors. First, C$^2$A casts pooling as an expectation over learned per-class spatial attention maps, yielding localized descriptors for each disease. Second, it couples these descriptors via a learnable graph warm-started from empirical label co-occurrence. A single residual message-passing step shares evidence among related findings, proving to be a bounded perturbation of the identity where co-occurrence enters each logit through an explicit bilinear interaction. On CheXpert, C$^2$A achieves a superior $0.895$ macro-mean AUROC, outperforming advanced context-gating baselines. Crucially, gains concentrate on highly co-occurrent classes with ambiguous spatial evidence (rescuing Atelectasis by $+1.5$ over GCG), demonstrating the prior's regularizing effect with a negligible overhead of one linear projection and a $C\!\times\!C$ edge matrix.

Linguistically-Aligned and Visually-Grounded Preference Optimization for Clinically-Augmented Medical Report Generation

Despite significant advances in Medical Report Generation (MRG), the reliability remains constrained by the prevalence of factual errors. While Direct Preference Optimization (DPO) has emerged as a promising post-training paradigm to enhance the performance of Supervised Fine-Tuned (SFT) MRG models, existing DPO-based MRG methods typically adopt a naive preference construction that directly pairs model-generated reports with ground truth reports. This strategy inadvertently entangles critical clinical findings with clinically irrelevant linguistic characteristics, and fundamentally lacks explicit vision-language alignment. To address these challenges, we propose DPO-Clin, a novel post-training framework that focuses preference optimization on clinical findings and cross-modal alignment. First, we introduce the Entity-level Clinical Diagnostic (ECD) module to perform a precise entity-level factual diagnosis. ECD guides the generation of linguistically-aligned report preference pairs, isolating clinical discrepancies from linguistic variations. Second, to achieve fine-grained cross-modal alignment, we develop M2DPO, a retrieval-augmented multi-modal DPO variant that enforces textual preference inversion triggered by visual context switches. Third, we locate correct yet highly uncertain predicted entities and apply counterfactual modifications to construct targeted preference data for latent risk mitigation, thereby further enhancing the model reliability. Extensive experiments on two public chest X-ray datasets (MIMIC-CXR and IU X-Ray) and an in-house endoscopy dataset demonstrate that DPO-Clin significantly improves the SFT baselines on clinical-aware metrics. Furthermore, it achieves superior performance over existing DPO-based MRG methods, exhibiting robust generalizability across distinct baseline architectures and diverse medical imaging modalities.

Positive-Unlabeled Preference Optimization For Chest X-ray Report Generation

Vision-Language Models (VLMs) for radiology report generation are typically trained on retrospective clinical reports, which suffer from omission noise: clinically present findings are left unreported due to the omission of subtle findings. For example, prior studies show that cardiomegaly may be omitted from ICU chest X-ray reports when the imaging request is focused on monitoring support device placement. As a result, models trained with standard approaches inherit these omissions, learning to under-report findings themselves. We propose PU-DPO, a preference optimization framework to prevent omission noise from corrupting the preference signal. We reformulate the objective under a positive-unlabeled (PU) learning framework, treating absent mentions as unlabeled rather than truly negative. Our framework provides preference supervision using constructed contrastive pairs, generated using edits to model responses, producing variants that explicitly mention or omit a specific finding. Generated responses that mention the finding are naturally preferred in the context of visual evidence. Across semi-synthetic experiments and analyses on real-world chest radiograph benchmarks where adjudicated labels are available, PU-DPO yields consistent gains in detection rates and recovery of hidden positives across multiple pathologies, and is more robust to omission noise than prior approaches.

CARE-X: Towards Clinically Useful Radiology VLMs with Auxiliary Supervision, Reward-Aligned Learning, and Tool-Augmented Measurement

A clinically useful chest X-ray system must go beyond fluent report generation: it should classify findings with tunable decision thresholds, localize them spatially, and derive the anatomical measurements upon which many diagnoses depend. Today's Vision-Language Models (VLMs) treat these as separate problems, if they address them at all, leaving a gap between what radiologists need and what generative models provide. We introduce CARE-X, a chest X-ray VLM that narrows this gap by unifying auxiliary discriminative supervision with reward-aligned generation. CARE-X augments its generative backbone with focal-loss classification and composite-loss grounding heads, co-trained alongside the language-modeling objective. This auxiliary supervision produces discriminative diagnostic predictions with tunable decision thresholds and precise spatial localization while also improving report quality, providing evidence that structured prediction and generation reinforce one another. Building on this foundation, Decoupled Clip and Dynamic Sampling Policy Optimization (DAPO) leverages task-specific reward signals for report generation, visual question answering (VQA), and spatial grounding, directly optimizing the clinical quality metrics that matter in practice. The result is state-of-the-art performance on the majority of metrics across four report-generation benchmarks, 94.0% VQA accuracy on ReXVQA (+6.0 pp over the next-best baseline), and generative spatial decoding that reaches near parity with dedicated detection heads. Separately, to address measurement-dependent diagnoses, we couple Qwen3-VL-4B-Instruct with native tool-calling capabilities for invoking deterministic measurement tools, while retaining full visual access to the image. This hybrid inference yields +43.6 pp average F1 over perception-only baselines across five measurement-dependent conditions.

Clinically-Grounded Hierarchical Classification for Consistent Chest X-ray Interpretation

Accurate chest X-ray interpretation is inherently hierarchical. Clinical decisions depend not only on what abnormality is present but where it is situated, requiring reasoning from broad anatomical systems down to specific pathological findings. Yet existing automated systems largely treat this as a flat classification problem, failing to capture inter-level dependencies or enforce coherence between coarse and fine predictions. We propose CHASE (Classification with Hierarchical Analysis and Structured Enforcement), a unified single-stage framework that mirrors radiologists' coarse-to-fine reasoning through a clinically driven three-level taxonomy of 9 anatomical regions, 17 sub-regions, and 28 pathological findings. CHASE jointly optimizes multi-level supervision, cross-level probability alignment, and a hierarchy-violation penalty within a shared Vision Transformer backbone. This ensures that fine-grained findings are anatomically supported by their coarser-level context rather than predicted in isolation. Experiments demonstrate that CHASE outperforms flat and hierarchical baselines across all levels while achieving superior probabilistic hierarchy consistency, with level-wise attention maps confirming anatomically grounded predictions. Code is available at: https://github.com/yejix-ai/CHASE.

HarMoE: Multi-Source Chest Radiograph Pretraining with Dataset-Disentangled Experts

Recent vision-language models for chest X-ray understanding are largely built on image-report alignment and therefore rely heavily on MIMIC-CXR as the dominant pretraining source. While effective at scale, this paradigm underexplores an important alternative source of supervision: a range of existing multi-label classification datasets, which provide cleaner and more explicit disease signals than free-text reports, and can offer broader pathology coverage when combined across sources. However, learning from such heterogeneous datasets is nontrivial, as differences in label ontologies, annotation protocols, acquisition pipelines, and report styles can cause models to entangle clinical semantics with dataset identity, leading to poor transfer despite increased scale. In this work, we revisit radiology VLM construction from the perspective of harmonized multi-source learning. We propose HarMoE, a dataset-aware mixture-of-experts framework that learns shared cross-dataset medical semantics while confining source-specific variation to lightweight residual experts in deeper decoder layers. To further exploit clean supervision from labeled datasets, we train in a unified disease vocabulary with masked multi-dataset supervision, enabling the model to leverage complementary annotations without introducing false negatives. Experiments on large-scale chest X-ray benchmarks show that HarMoE consistently improves zero-shot classification, out-of-distribution transfer, and grounding over strong baselines. Our results suggest that building robust radiology VLMs requires moving beyond single-source image-report alignment toward structured knowledge construction from heterogeneous datasets with cleaner supervision and broader coverage. Code and the 873k harmonized dataset will be released at https://github.com/Roypic/harmoe.

SecondOpinion: Anatomy-Aware Gated Reasoning for Efficient Medical Image Analysis

Deep learning models for medical image analysis typically apply a fixed amount of computation to every input, regardless of case difficulty. Anatomy-guided dual-stream architectures have been shown to improve diagnostic performance, but they evaluate both streams unconditionally, even on cases a single stream could already resolve confidently. We propose SecondOpinion, a framework in which a fast primary stream processes every case, while a second, anatomy-guided stream is invoked only when GateKeeper, a gating mechanism trained explicitly as a binary correctness classifier, judges that the primary stream's prediction needs additional scrutiny, much as a clinician might seek a second opinion on a difficult case. When activated, the two streams are combined through a lightweight cross-attention fusion module. We evaluate SecondOpinion on a unified five-class chest X-ray dataset and a pelvic fracture dataset, the latter including a held-out, harder subset of fractures that are invisible on X-ray but confirmed via CT. SecondOpinion matches or exceeds prior state-of-the-art performance on both tasks, while activating its anatomy-guided stream on only 9.23% of chest X-ray cases, rising to 24.12% on visible fractures and 45.71% on invisible fractures, an activation rate that tracks task difficulty directly. These results suggest that supervising a gating signal toward correctness, rather than relying on unsupervised confidence, allows a model to allocate anatomical reasoning where it is actually needed.

Toward Multi-Modal Deep Learning for Pulmonary Disease Classification: A Texture-Based Machine Learning Pilot Study on Public Chest X-Ray Data

Automated classification of pulmonary disease from chest radiographs is a widely studied application of machine learning in medical imaging. This paper presents a pilot study evaluating classical texture- and gradient-based feature representations for distinguishing COVID-19 from other forms of pneumonia using the publicly available COVID-19 Image Data Collection (668 posteroanterior/anteroposterior radiographs from 408 patients). Using histogram of oriented gradients (HOG) and gray-level co-occurrence matrix (GLCM) texture descriptors with classical classifiers (logistic regression, random forest, and support vector machine), evaluated under patient-level 5-fold stratified cross-validation to prevent data leakage, we obtain a best mean accuracy of 75.4% and AUC of 0.755, modestly exceeding the 71.6% majority-class baseline. We report these results transparently, including their limitations, and use them to motivate and scope a proposed multi-modal deep learning architecture -- combining convolutional and transformer-based encoders across imaging modalities -- as a direction for future work requiring access to larger, multi-institutional, ethically sourced datasets.

Rethinking Clinical Relevance in Chest X-ray Machine Learning: How Evaluation References Define Performance

Chest X-ray (CXR) machine learning relies heavily on automated evaluation using reference standards that aim to approximate clinical judgment. However, commonly used report-derived labels for pathology classification or generic image quality metrics for reconstruction may not reliably reflect clinical judgment. We systematically investigate how evaluation-reference choices affect model performance and ranking in both pathology classification and image quality assessment (IQA). To enable controlled comparison across evaluation references, we collected paired expert image- and report-derived labels for thoracic findings from a clinical cohort at Cambridge University Hospitals (CUH) and curated a subset of the public MIMIC-CXR dataset, along with expert ratings of diagnostic image quality. We show that for supervised image classifiers (ResNet, DenseNet), several zero-shot and fine-tuned vision-language models (e.g., MedKLIP, GLoRIA, and ConVIRT), changing the label source leads to substantial differences not only in performance estimates but also in model rankings. In parallel, alignment of IQA measures with expert judgment depends heavily on the choice of measure, and commonly used IQA metrics such as SSIM and PSNR often fail to align with expert assessments of diagnostic usability. Our results demonstrate that evaluation choices are crucial: they can determine which models and methods appear best and are therefore selected for further development or deployment. The selection of evaluation references should therefore be treated as a central component of clinical validity in CXR machine learning, and justified with respect to the pathology, imaging task, and intended downstream clinical use.

KANEx: Translating Kolmogorov-Arnold Networks' Interpretability to Medical Explainability

Computer vision models have become highly effective for medical applications, yet their black-box nature continues to undermine clinician trust. In clinical workflows, chest X-ray classifiers are increasingly paired with Vision-Language Models (VLMs) to generate natural-language explanations. However, these systems add linguistic fluency without addressing the underlying opacity of the visual model. With the emergence of Kolmogorov-Arnold Networks (KANs), whose spline-based components provide inherently interpretable functional units, we investigate whether this architectural transparency can be leveraged to produce more trustworthy textual explanations. We introduce KANEx, the first ever framework that leverages the symbolic transparency of KANs to ground VLM reasoning. This interpretability also made it possible to design KAN-Map, a novel heatmap generation method derived directly from KAN models rather than gradient approximations. We feed these grounded contexts into downstream VLMs for enhanced explainability. Benchmarked on the MIMIC-CXR dataset, we demonstrate that KAN-based architectures with ResNet/ViT baselines demonstrate improved semantic similarity while producing significantly more faithful saliency maps. KAN architectures improve visual localization and downstream reasoning quality by 10%. Our findings suggest that grounding linguistic explanations and visual attributions in mathematically interpretable units is a necessary step toward trustworthy medical AI.

Attention Without Grounding: Causal Evaluation of Visual Explanations in Medical VLMs

Attention and saliency heatmaps are widely used to explain medical Vision-Language Model (VLM) outputs on chest X-rays, yet whether they truly highlight the image evidence driving predictions has not been causally tested. We audit faithfulness via overlap with radiologist bounding boxes on PadChest (n=637), attribution mass within radiologist masks on CheXlocalize (n=643), and 16x16 patch-occlusion maps that record which regions, when hidden, change the answer. We study three MedGemma-4B variants, cross-family probes on LLaVA-RAD and Qwen3-VL-8B-Instruct, and the specialist CheXagent-2-3b, with two CXR-trained classifiers (DenseNet121, ResNet50) as positive controls. A heatmap is faithful only if the model uses the image and attention concentrates on regions whose occlusion alters the prediction. No evaluated VLM meets both criteria. MedGemma and Qwen3-VL use the image, but attention anti-correlates with patch-occlusion importance (rho < 0 with 95% bootstrap CIs below zero). LLaVA-RAD's attention correlates positively, but the model is almost text-only (99.1% text-only agreement, near-zero causal mass), so correlation ties two near-zero signals. Attention also misses annotated anatomy: overlap with true regions never beats shifted or random controls, and no method places more than 22% of its mass inside radiologist masks. The two CXR classifiers pass all metrics, indicating the failure is specific to VLM heatmaps, not the evaluation. These heatmaps are visually reassuring but not faithful; clinical explanations require controlled localization metrics and causal perturbation, not visual inspection alone.

Position: Explanation Stability Is a Property of the Model Method Pair, Not the Model

This position paper argues that claims about explanation stability are scientifically invalid without cross method validation. Just as statistical significance requires the test statistic to be specified, stability should either be evaluated across multiple attribution paradigms or explicitly scoped to the computational objective of a single method. In controlled chest X ray experiments, DenseNet201, ResNet50V2, and InceptionV3 achieved AUC values above 99%, yet their stability rankings reversed across attribution methods. LayerCAM ranked InceptionV3 as the most stable model, with an IoU of 0.777, whereas GradCAM++ favored DenseNet201 and reduced InceptionV3 stability score by 17.3%. These findings demonstrate that explanation stability is an emergent property of the model method pair rather than an intrinsic characteristic of the model alone. We therefore argue that explanation based claims should be validated across multiple attribution methods and that regulatory submissions should explicitly specify the attribution operators used to avoid creating illusory safety assurances.

Seeing What Matters: Lesion-Aware High-Resolution Patch Discovery and Fusion for Chest X-ray Report Generation

Despite rapid advances in chest X-ray (CXR) foundation models, most radiology report generation (RRG) systems still rely on heavily downsampled inputs (e.g., 256x256) due to the fixed visual token budgets of pretrained vision encoders, suppressing subtle yet clinically important cues present in native-resolution images. However, enabling high-resolution (high-res) perception remains challenging: naive tiling causes prohibitive token inflation, while global compression suppresses subtle lesions and degrades diagnostic fidelity. Inspired by radiologists' workflow, localizing suspicious regions before detailed high-res assessment. We propose Lesion-Aware High-Resolution Patch Discovery and Fusion for Chest X-ray Reporting (LePaX), the first RRG framework that enables efficient high-res CXR perception (up to 1920x1920) without increasing the vision-token count. LePaX formulates high-res perception as a constrained spatial resolution allocation problem under a fixed token budget and introduces two key components: Learnable Spatial Resolution Allocation (LSRA), which learns a spatial utility map that adaptively allocates limited high-res capacity to diagnostically relevant regions, enabling targeted extraction of high-res patches from native CXRs; and Global-Regional Fusion (GRF), which performs token-preserving region-to-global refinement by projecting high-resolution regional evidence back onto the global feature grid through spatially aligned resolution write-back, avoiding token inflation. Experiments on multiple CXR benchmarks demonstrate that LePaX consistently improves both clinical and linguistic metrics while enabling native-resolution CXR perception with over 10x fewer visual tokens than naive high-res tiling.

Taxlifier: Leveraging Disease Taxonomy for Enhanced Multi-Label Classification in Chest Radiography

Accurate and efficient classification of thoracic diseases in chest X-ray (CXR) images is crucial for timely diagnosis and treatment. However, the presence of multiple pathologies with overlapping visual characteristics poses significant challenges for automated classification systems. In this study, we propose two novel hierarchical multi-label classification techniques, namely the loss-based and logit-based methods, to address these challenges by leveraging the hierarchical relationships among different thoracic pathologies. The loss-based technique integrates hierarchical information directly into the optimization process, while the logit-based method adjusts the predicted probabilities of each class based on its parent class in the disease taxonomy. We evaluate the performance of both techniques using three large-scale CXR datasets: CheXpert (224,316 CXRs), PADCHEST (160,000 CXRs), and NIH (112,120 CXRs). The experimental results demonstrate significant improvements in accuracy, AUC, and F1 scores compared to the baseline method across various pathologies. The logit-based and loss-based methods improve accuracy by 12\% and 11\%, AUC by 13\% and 10\%, and F1 scores by 24\% and 12\%, respectively compared to the baseline. These results represent a substantial improvement over the baseline method. Furthermore, we conduct a comprehensive statistical analysis to validate the robustness and reliability of the proposed techniques. The integration of domain-specific hierarchical knowledge not only enhances the classification performance but also provides a more interpretable output for clinical decision support. Our findings highlight the potential of hierarchical multi-label classification in advancing computer-aided diagnosis systems for chest radiography.

PulmoSight-XAI: An Explainable Multi-View Attention Ensemble with Gradient Boosting Meta-Learning for Multi-Label Chest X-Ray Classification

Automated chest X-ray classification remains challenging due to severe class imbalance, co-occurring pathologies, and the loss of localized features in conventional architectures. To address these, we propose an explainable hierarchical multi-view ensemble framework for the robust classification of 14 thoracic pathologies. The framework employs view-specific training by independently modeling frontal and lateral radiographs using an ensemble of five complementary convolutional neural networks. Replacing global average pooling, a multi-scale feature fusion strategy augmented with Convolutional Block Attention Modules (CBAM) preserves fine-grained intermediate representations while emphasizing high-level pathology-specific semantic features. To mitigate positive-negative imbalance and varying inter-class difficulty, models are optimized using a novel hybrid objective combining Asymmetric Loss with Adaptive Focal Loss. Beyond simple probability averaging, the framework incorporates a hierarchical meta-learning strategy where test-time augmentation (TTA) predictions and cross-model uncertainty measures are integrated into Level-1 gradient-boosting meta-learners (XGBoost, LightGBM, and CatBoost), followed by Level-2 stacking with optimized alpha blending. Evaluated on a large-scale CheXpert-style dataset, the framework achieves state-of-the-art macro-average AUROC scores of 0.9319 for frontal and 0.9154 for lateral radiographs. Furthermore, comprehensive explainability analysis using seven post-hoc attribution techniques demonstrates strong anatomical consistency and clinically meaningful decision localization. By integrating architectural diversity, multi-scale attention, hierarchical meta-learning, and rigorous explainability, the proposed framework provides a transparent, highly accurate, and clinically practical computer-aided diagnosis system for thoracic disease classification.

Leveraging Pathology Co-occurrence for Test-Time Adaptation in Chest X-Ray Diagnosis

Medical imaging models often degrade when deployed at new clinical sites due to differences in imaging equipment, protocols, and patient populations. Test-time adaptation (TTA) addresses this by updating a pretrained model using only unlabeled target data, without access to source data. However, existing TTA methods were designed for single-label classification on natural image benchmarks, minimizing entropy uniformly across all samples without considering label dependencies. This overlooks a key property of multi-label medical imaging: pathologies do not occur independently but exhibit structured co-occurrence patterns. In this work, we propose Co-occurrence Weighted Adaptation (CoWA), which leverages disease co-occurrence patterns as a reliability signal for adaptation. CoWA estimates label co-occurrence structure from model predictions and downweights samples that deviate from expected patterns, enabling adaptation to rely more on consistent predictions while reducing the impact of noisy ones. We evaluate CoWA on chest X-ray benchmarks under domain shifts and demonstrate consistent improvements over established baselines.

GRCD: Grounded Region Change Detection for Multi-Finding Chest X-Ray Pairs

Radiologists routinely compare current and prior chest X-rays to track disease progression, producing follow-up reports that describe multiple findings, each localised to an anatomical region and annotated with a temporal change status. Existing automated methods either generate reports from a single image without modelling temporal context, or incorporate temporal information but do not ground their outputs spatially. The few approaches that combine temporal reasoning with spatial grounding are restricted to single-finding descriptions, leaving multi-finding reports with mixed change directions unaddressed. We present GRCD, a framework for grounded report generation from chest X-ray pairs in the multi-finding setting. We first construct a rigorously cleaned dataset of temporal chest X-ray pairs by identifying and correcting two systematic labelling errors in the source annotations. We then introduce a Region-Guided Change Token module that encodes per-region temporal change across anatomical structures and injects this signal into a language model through a dual-pathway strategy combining prepended spatial tokens with gated cross-attention. On a multi-finding test set, GRCD outperforms existing baselines on text generation and clinical accuracy metrics, with gains in change detection. Ablation studies confirm that the dual-pathway design outperforms either integration strategy in isolation on text and clinical metrics, and that region-level change encoding is necessary for multi-finding generation. Code is available at https://github.com/UTSA-VIRLab/GRCD

Spatio-Temporal and Clinical Conditioning for Fine-Grained Radiology Report Retrieval

Radiology is vital to modern healthcare, but rising imaging demand and persistent workforce shortages strain reporting capacity and clinical workflows. Automated radiology report generation has the potential to support radiologists and help alleviate this burden; however, existing retrieval-based methods remain rigid, lack explicit anatomical grounding, and do not account for longitudinal disease progression or available clinical context. In this work, we introduce STAR3, a multimodal, spatio-temporal, attentive retrieval framework for radiology report generation that aligns region-level anatomical information with clinical indications and longitudinal changes across chest X-ray studies. Our framework employs an object detector to identify anatomically meaningful regions and retrieves semantically relevant report sentences conditioned on both current clinical context and changes observed between prior and current examinations. This design enables anatomically and temporally grounded report generation that better reflects clinical reporting practice. Experiments on the MIMIC-CXR dataset demonstrate that STAR3 outperforms current retrieval-based approaches on retrieval, NLP and clinical metrics, highlighting the value of conditioning retrieval anatomically, temporally and clinically for advancing automated radiology report generation.

SHOVIR: A Benchmark for Evaluating Vision Shortcut Learning in Radiology Report Generation

Current evaluation protocols for Vision-Language Models (VLMs) in Radiology Report Generation (RRG) rely on report-level metrics that measure lexical overlap or aggregate clinical correctness. However, such metrics do not test whether individual diagnostic statements stem from the actual pathological evidence visible in the image. This allows models to achieve competitive scores by exploiting learned priors or spurious correlations, a failure mode we refer to as vision shortcut. We introduce SHOVIR, a benchmark for evaluating vision shortcut behavior in RRG. SHOVIR extends two spatially annotated chest X-ray datasets, MIMIC-CXR and PadChest-GR, with per-box CheXpert labels, and defines image-level and disease-level occlusion experiments that contrast baseline performance on clean images against localized, region-specific perturbations. Comparing predictions across these conditions isolates two failure modes at the disease-class level: direct shortcuts, where a finding persists after its visual evidence is removed, and contextual shortcuts, where detection degrades once co-occurring pathologies are occluded despite the target region remaining intact. Benchmarking eight state-of-the-art VLMs, we find that shortcut behavior varies substantially across architectures and datasets. Models achieving the highest baseline report quality do not necessarily rank highest in spatial grounding, revealing that clinically fluent generation can coexist with shallow reliance on visual evidence. These findings expose a blind spot in current RRG evaluation and motivate region-aware assessment protocols.

Accurate Recognition of Pneumonia and COVID-19 by Geometric Shape Normalization of Lung Region using Automatic Landmark Detection and Piecewise Affine Warping

This paper presents an automatic system for recognizing pulmonary diseases in chest X-rays using geometric normalization of the lung region. The method combines three modules: (1) a ResNet-18 landmark detector with coordinate attention that predicts 15 lung-contour landmarks, achieving a mean localization error of 3.61 pixels through an ensemble of four models with test-time augmentation; (2) a geometric normalizer based on Generalized Procrustes Analysis, Delaunay triangulation, and piecewise affine warping to map each lung region to a standardized shape; and (3) a ResNet-18 classifier with transfer learning and SAHS contrast enhancement to classify images as COVID-19, Viral Pneumonia, or Normal. On the COVID-19 Radiography Database, the normalized-image classifier achieved 98.60+/-0.26% accuracy and 98.00% F1-Macro using five-fold cross-validation. Although original images produced slightly higher raw accuracy, Grad-CAM and cropping experiments suggest that this advantage is partly influenced by acquisition artifacts. In contrast, geometrically normalized images outperformed artifact-masked/cropped unaligned images on both the COVID-19 Radiography Database (98.60% vs. 96.24%) and a balanced adult-pediatric mixed dataset including pediatric cases from the Kermany dataset (94.67% vs. 94.17%). These results suggest that anatomical alignment can provide a more controlled and artifact-resistant representation for pulmonary disease recognition.