Wearable device data enables continuous health monitoring, but suffers from structured missingness: features sharing a physical sensor drop out together. Deep imputation methods such as BRITS and SAITS have seen limited evaluation on multimodal physiological data under realistic missingness, and existing benchmarks use random-point holdout protocols that incorrectly assume missingness is independent across features and time. Using data from a person with epilepsy recorded on a Garmin smartwatch, we develop an evaluation protocol that mines contiguous missing-run templates from training data, stratifies them by per-feature gap-length quantiles, and injects them as block masks with preserved co-missingness structure. A matched training protocol exposing models to the same missingness distribution reduces BRITS's severe-gap MAE by 43%, demonstrating the potential benefit of the proposed evaluation and training protocol within this single-participant dataset. We further extend BRITS with time-of-day encoding and a circadian harmonic channel. No single model dominates: linear interpolation is optimal for slow-moving features over short gaps; extended BRITS achieves lower MAE on dynamic cardiac features in moderate and severe gaps; and SAITS better preserves the ground-truth distribution by Jensen-Shannon distance despite higher MAE. Ultimately, model rankings strongly depend on evaluation designs. By exposing how traditional evaluation methods obscure true model capabilities, our transferable protocol establishes critical steps towards developing better imputation strategies for future multi-sensor wearable datasets.
Ian Hultman, Kirtikanth Kalapatapu, Yassine Filali +2stat.ML cs.LG stat.CO stat.ME
Complex-valued arrays arise in signal processing, where scientific interpretation depends on retaining amplitude and phase information. Existing covariance estimation methods either ignore the multiway organization of such data or rely on real-domain embeddings that do not directly exploit their complex structure. We develop sparse separable factor analysis (SSFA), a latent factor model for complex-valued arrays with a separable covariance structure across modes. Each mode-specific covariance matrix is modeled through a low-rank Hermitian factor structure and a diagonal residual covariance matrix. To obtain interpretable estimates, we impose elementwise lasso penalties on the complex loading matrices and estimate the SSFA parameters using a mode-wise parameter-expanded expectation-maximization procedure. The resulting loading updates admit closed-form complex soft-thresholding solutions, which shrink the modulus of each loading while preserving its phase. A separate balancing step resolves the scale nonidentifiability of the separable covariance structure. Simulation studies show that SSFA improves covariance estimation relative to vectorization-based methods, including complex principal component analysis. We apply SSFA to local field potential recordings from mice, where we compare separability structures induced by different groupings of brain region, frequency, and time and perform model-based imputation of recordings missing because of electrode misplacement.
Md. Atik Shams, David Eisenberg, Sumaiya Fatema +12cs.LG
Chronic kidney disease (CKD) progresses silently and severely undermines quality of life, making early detection critical for improving patient outcomes. We present a two-part study that combines large-scale telehealth data with advanced machine learning to both classify self-reported CKD status and identify key drivers of disease. Using selected features from the Behavioral Risk Factor Surveillance System (BRFSS 2021: 438,693 samples; BRFSS 2019: 418,268 samples) and the National Health Interview Survey (NHIS 2021: 29,482 samples; NHIS 2020: 31,568 samples), we addressed missing data with nine state-of-the-art imputation methods and mitigated class imbalance via sampling strategies. Our customized stacked ensemble model achieved balanced accuracy of 72.56-76.12%, with corresponding AUROC scores of 79.59-82.29%. SHapley Additive exPlanations (SHAP) analysis, followed by clinical review, highlighted critical predictors, including regular medical check-ups, age, blood pressure, and indicators of mental health stress. These findings deliver a robust and interpretable framework for CKD risk stratification and provide actionable insights into its associated factors.
Longitudinal multiparametric MRI is central to follow-up imaging in oncology, yet real-world clinical data are characterised by missing sequences, heterogeneous acquisition protocols, and varying spatial resolutions across time points. We propose a patient-specific conditional implicit neural representation (INR) that models multimodal longitudinal MRI as a continuous function of world coordinates, time, and modality conditioning. The model is trained with stochastic modality dropout to handle incomplete data, and its continuous coordinate-space formulation enables both spatial and temporal interpolation without resampling to a fixed voxel grid. A self-consistency-based confidence estimator is derived from cross-modal reconstruction performance at inference time. We evaluate the framework on longitudinal MRI from paediatric brain tumour patients, demonstrating statistically significant improvements over linear interpolation for T1CE and FLAIR (p < 0.05), with mean MS-SSIM of 0.95 $\pm$ 0.02 for T1CE. Predicted confidence correlates strongly with true reconstruction quality (Pearson r up to 0.996), suggesting reliable deployment potential in heterogeneous clinical settings.
Luukas Peräkylä, Fahad Sohrab, Ville Hautamäki +3cs.LG
Short-term Heart Rate Variability (HRV) forecasting could provide clinicians with actionable lead time for detecting autonomic dysfunction and adverse cardiac events. Consumer wearable devices generate fragmented, artifact-rich HRV signals that challenge conventional forecasting approaches. In this study, we evaluated the forecasting ability of three Time Series Foundation Models (TSFMs), TimesFM, Chronos, and MOIRAI, against traditional baselines (Mean, Exponential Smoothing, and Exponentially Weighted Moving Average) on real-world wearable data collected from 49 healthy individuals. To address data fragmentation, we introduce a variability-preserving imputation method that augments linear interpolation with locally adaptive stochastic noise, retaining physiological dynamics essential for accurate forecasting. The results show that TSFMs outperformed all baselines without fine-tuning, achieving average Mean Absolute Scaled Error (MASE) between 0.81 and 0.87 across TSFMs and both context lengths (32 and 64 time steps), with Chronos and TimesFM as the top models, though MOIRAI showed limited gains over baselines. With up to a 2-hour forecast horizon, the results establish a baseline for TSFMs' performance on a real-world dataset, highlighting domain-specific fine-tuning as a promising direction for clinical deployment.