TopoAgent: A Structure-Aware Perception-to-Reasoning Framework for Diagram-to-Graph Topology Extraction with Large Vision-Language Models

Diagram-to-graph topology extraction aims to extract a graph of entities and their connections from a structural diagram. This task remains challenging for current vision-language models because it requires both fine-grained perceptual grounding and topology-aware reasoning with global consistency. We present TopoBench-180, a human-verified benchmark for diagram-to-graph topology extraction, and TopoAgent, a structure-aware perception-to-reasoning framework for reliable topology extraction using large vision-language models. TopoBench-180 contains 180 structural diagrams spanning Web-style and Network-style categories, paired with canonical graph annotations. TopoAgent progressively extracts the target graph by combining grounded perception, global structural priors, canonical node inventory construction, node-centric local-to-global relation reasoning, and topological consistency enforcement. Experiments on TopoBench-180 show that TopoAgent outperforms strong vision-language model baselines and recent visual reasoning frameworks, especially on edge extraction. More broadly, this work fills an important gap in multimodal structured understanding by establishing a benchmark and framework for diagram-to-graph topology extraction. The benchmark and associated resources will be publicly released at https://huggingface.co/datasets/WayneGuo0011/TopoBench-180.

SCAFFOLD: A Large-Scale Structured Dataset of Computer Science Research Figures with Diagram QA and Chain-of-Thought Reasoning Traces

Computer science papers rely heavily on diagrams: architecture drawings, system flowcharts, and pipeline schematics that often carry more information than the text around them. There is currently no public dataset that pairs this specific kind of figure with captions, context, questions, answers, and step-by-step reasoning, which is exactly what is needed to train a vision-language model to understand them. We present \textbf{SCAFFOLD}\footnote{https://github.com/theranjitraut/scaffold}, a large-scale structured dataset of computer science research figures with diagram QA and Chain-of-Thought reasoning traces. This dataset consists of (image, caption, context, question-answer, chain-of-thought) tuples from arXiv computer science papers prepared using layout detection and PDF parsing, with an AI-assisted question-generation step. The resulting large-sized SCAFFOLD-157K dataset spans 3,058 papers with 29,887 figures (157,387 pairs), a medium-sized SCAFFOLD-37K dataset (36,797 pairs), and a small-sized SCAFFOLD-12K dataset (12,000 pairs). We used SCAFFOLD-12K for baseline experiments on Qwen2.5-VL-3B-Instruct.

Diagram-MMU: A Multi-Modal Benchmark for Scientific Diagrams

Multimodal Large Language Models (MLLMs) have been growing the capability for scientific writing and collaboration. For example, OpenAI Prism is a free workspace for scientific writing and collaboration. One important feature in Prism is turning scientific diagrams directly into LaTeX TikZ code. In this paper, we build a benchmark, Diagram-MMU, a multi-modal benchmark designed to assess MLLMs' ability for scientific diagram parsing and understanding. Diagram-MMU features 3.7k curated diagrams and 18.3k human-validated questions across six domains. It evaluates MLLMs on three tasks common in vibe writing workspaces: diagram-to-code parsing, diagram-to-code editing, and diagram question answering, alongside agentic settings per task. The evaluation of 12 MLLMs reveals that diagram-to-code tasks are more challenging than diagram question answering: models can reason well over diagrams but struggle to parse and edit them, underscoring the need for methods to enhance MLLMs' capability in diagram-to-code generation. Under agentic settings, most models improve parsing and editing performance but degrade on question answering, while Claude-4.6 Opus consistently improves across all three tasks. Project Page: https://vi-ocean.github.io/projects/diagram-mmu.

ERUnderstand: Evaluating Vision-Language Models on Structured ER Diagrams

Entity-Relationship Diagrams (ERDs) are central to conceptual database design, yet they are typically available only as rendered images rather than machine-readable schemas, limiting AI-assisted database engineering. We introduce ERUnderstand, the first large-scale benchmark for structured understanding of ER diagrams, comprising 2,960 diagrams collected from curated educational sources, real-world schemas, and synthetically generated examples spanning diverse domains, notations, complexity levels, and Extended Entity-Relationship (EER) constructs. Each diagram is paired with a standardized machine-readable representation for fine-grained evaluation of schema elements. Evaluating state-of-the-art Vision-Language Models (VLMs), we find that while common ERD elements are recovered reliably (F1 > 0.74), performance drops sharply on weak entities (as low as 0.28 F1), multivalued attributes (0.14 F1), and N-ary relationships (0.07 F1). Reasoning-augmented models improve overall performance by 15-25% but remain sensitive to linguistic priors and increasing diagram complexity. ERUnderstand provides a standardized benchmark for evaluating multimodal understanding of conceptual database schemas. The benchmark, dataset, evaluation toolkit, and generation code are publicly available at https://github.com/salinaria/ERUnderstand.