Diagnosing and Mitigating Perception-Decision Misalignment in Omni-LLMs via Modality Subspace Activation

Omni-Large Language Models (Omni-LLMs) power complex multi-modal reasoning in applications like World Action Models and autonomous agents. However, their strong performance often masks a profound Perceptual-Decision Misalignment (PDM), where decisions remain unfaithful to multi-modal perceptions. To diagnose this, we formalize Causal Modality Sensitivity (CMS), operationalized via a dual-lens framework: Answer Retention Rate (ARR) at the macro behavioral level, and Logit Angular Discrepancy (LAD) to track microscopic distribution shifts. We also curate CausalMSBench, a diagnostic dataset isolating language priors. Benchmarking reveals that popular Omni-LLMs exhibit critically low CMS, showing negligible distribution shifts even when key modalities are removed. To rectify this, we propose Modality Subspace Activation (MSA), a training-free inference-time framework that uses Singular Value Decomposition (SVD) to estimate modal activation strengths. MSA dynamically balances modal projections in the last hidden state, effectively restoring CMS across benchmarks.

Visual Instruction Tuning Aligns Modalities through Abstraction

Visual instruction tuning effectively adapts a pre-trained Large Language Model (LLM) to process image information alongside text. Yet, it remains unclear how visual features are embedded into the layer-wise hierarchy of abstractions of the LLM backbone. Across a diverse set of vision-language architectures, we show that instruction tuning primarily serves as a bridge, embedding visual features directly into the intermediate semantic layers of the LLM, bypassing the early layers devoted to unimodal processing. With probing analyses and causal interventions, we show that these intermediate layers are the semantic core of vision-language processing and play a critical role in the performance on a broad set of multimodal benchmarks. In addition, by comparing the geometry of semantically equivalent visual and textual representations, we find that fine-tuning extends and strengthens the existing abstraction phase, aligning visual features with pre-existing textual ones. Finally, we confirm the functional role of this localized alignment by restricting fine-tuning to intermediate layers alone: this strategy preserves the performance of full fine-tuning on vision-centric benchmarks while reducing training time. Our results suggest that multimodal integration is a localized phenomenon driven by the repurposing of the internal abstraction engine of the LLM.