Towards unsupervised representation learning for quantum data: quantum models with inference and generation

With quantum sensors, simulators and networks emerging, a future of quantum technology may produce quantum states as data---that is, coherently rather than as classical measurement records---thus motivating the study of suitable quantum generalisations of modern machine learning, including the automated, unsupervised extraction of useful representations. Two ingredients are central to the latter: inference, mapping observations to latent representations, and generation, mapping latent states back to synthetic data. Both are related to each other and to joint distributions for training models by the chain-rule of classical probability theory. The fact that quantum states however lack such universal, standard factorisation property thus poses a challenge. Here we develop a conceptual and mathematical framework for unsupervised representation learning from quantum data. Models are joint quantum states over visible and latent systems; state-over-time maps provide a notion of factorisation into a marginal state and inference (generation) channel; models with inference (generation) are ambiguous states---states for which such factorisation obtains---subject to a further consistency condition on extended inference maps as data extension. These stipulations are restrictive: we show that non-trivial models must feature non-linear such maps to the extended space. For three representative state-over-time maps, we completely characterise the ambiguous states, uncovering a hierarchy tied to the positive-partial-transpose (PPT) criterion from entanglement theory. Notably, the Leifer-Spekkens construction supports inference and generation exactly for model classes of PPT states, thus allowing genuinely quantum visible-latent correlations. We also formulate quantum counterparts of exact and approximate inference training, explore weaker notions of data extension and sketch a future research programme.

Orthogonal JEPA: Factorized Predictive States for Latent World Models

World models construct latent states that support prediction, planning, and reasoning about an underlying system. Joint-embedding predictive architectures (JEPAs) offer a direct way to learn such states by predicting targets in representation space instead of reconstructing every detail of the observation. Standard JEPAs, however, organize all predictable content through one target embedding and one prediction pathway. In complex systems, this monolithic state can allocate redundant capacity to dominant signals while providing weak or conflicting gradients to less dominant predictive structure. We introduce \method, a latent world-modeling framework based on orthogonal predictive factorization. Learned basis matrices analyze each target state into multiple components, and a dedicated prediction branch estimates each component from a shared context representation. Predictive regression preserves the factor magnitudes required for state synthesis, an orthogonality objective discourages repeated directions, factor-activity regularization maintains variation in projected targets, and online variance regularization discourages coordinate-wise encoder collapse. Predicted components are synthesized into a complete latent state that can be used by a readout, decoder, planner, or autoregressive rollout. The same predictive-state mechanism applies when the target is temporally future, spatially hidden, or another partial observation of the same system. Experiments on controlled vision, single-cell transcriptomics, longitudinal health records, continuous control, and molecular dynamics evaluate representation quality, forecasting, planning, and long-horizon stability.

Does Mapping Non-Maximal Probabilities to GMM Components Matter for S-JEPA Encoder Representations?

S-JEPA uses soft Gaussian mixture model (GMM) posteriors instead of hard cluster labels to preserve uncertainty. It remains unclear whether the probability values alone are sufficient, or whether it also matters which GMM components receive the non-maximal probabilities. We test this with two matched controls. FIXED-RANDPERM keeps the top-1 component and probability together with the multiset of non-maximal probability values, but reassigns those non-maximal values using a mapping fixed for each physical frame. UNIFORM-TAIL keeps the top-1 component, its probability, and total non-maximal mass but distributes that mass uniformly. Across three independent seeds, REAL SOFT outperforms both controls on two frozen Encoder readouts. It provides better recovery of the original GMM tail and greater accessibility of spectral dynamics over short time scales after controlling for the complete spectrum of the current frame. In two exposure experiments, both readouts improved overall as more frames retained the original mapping. We also descriptively follow one Phase 2 trajectory after the switch to the online GMM. These results show that the numerical probability structure of the soft target does not fully determine the learned Encoder representation. The mapping of non-maximal probabilities to GMM components also matters.

Generator-Aligned Representation Interfaces for Diagnostic Soft Equivariance

Exact-equivariant architectures typically encode prescribed group actions in specialized operators, which can complicate their reuse with generic backbones and across data modalities. We introduce the Generator-Aligned Representation Interface (GARI), a representation-level design principle that exposes selected transformation generators to a generic sequence backbone through aligned canonical and generator-induced views. We formalize the resulting behavior using a probe-specific soft-equivariance residual defined over declared data and transformation distributions. This framework distinguishes representation consistency from task robustness and exact equivariance, and localizes residual mismatch to interface construction, shared stream processing, and terminal fusion. We instantiate the interface as GARI-Net, which constructs generator-indexed streams, converts them into a common interaction frame, processes them with shared parameters, repairs ordering-induced context mismatch, enables cross-stream information exchange, and aggregates them using inter-stream discrepancy. Direct Equivariance Error (DEE) provides a frozen-checkpoint diagnostic of the prescribed representation relation under known token or voxel actions. Experiments on genomic sequences, images, and three-dimensional point clouds examine sequence reversal, planar rotations and reflections, and controlled axial transfer. Across these settings, the same interface principle supports task-relevant transformation consistency and generalization to declared held-out probes without requiring group-specific redesign of the sequence backbone. GARI therefore provides a portable diagnostic complement to hard-equivariant architectures: it makes generator structure accessible, learnable, and measurable, while finite-probe evidence remains distinct from certification of exact equivariance over a continuous group.

Emergent Generalization by Representation Learning in Artificial Neural Networks

Dimensionality reduction has proven powerful for identifying neural manifolds, which are low-dimensional structures underlying high-dimensional neural activity. These low-dimensional representations have improved the interpretability of population-level coding. Yet whether such low-dimensional representations are biologically relevant and confer functional advantages in learning systems, or merely reflect neuron-level activity, remains contested in neuroscience. We show that an explicit information bottleneck forcing a recurrent neural network to learn a low-dimensional representation is necessary for rotational and out-of-distribution generalisation in a time-series prediction task. Using information-theoretic measures of causal emergence, we characterise the dynamics of this representation across the memorisation-to-generalisation transition, finding a non-monotonic trajectory which shows an initial decrease, a minimum, and a subsequent rise to a maximum, even as prediction loss falls monotonically. This trajectory scales with task complexity, and the magnitude of emergent structure reliably predicts generalisation performance. Analysis of CA1 hippocampal activity in mice learning an alternating maze task reveals analogous non-monotonic emergence dynamics that track behavioural performance. Together, these findings indicate that the ability of neural networks to learn compact, distributed and emergent representations confers a functional advantage for generalisation, supporting a causal role for learned representations in cognition.

Sensor-Conditioned Representation Learning via Scene-Relevant Observation Quotients

Learned representations in intelligent sensing systems are often evaluated by reconstruction fidelity or downstream prediction accuracy, but these criteria do not specify which latent distinctions are justified by the sensing process. In sensor-conditioned environments, nuisance factors can change measurements without changing the scene, while distinct scenes may be indistinguishable under limited sensing capability. This paper formulates sensor-conditioned representation correctness as preserving sensing-supported scene distinctions while suppressing nuisance-induced and sensor-unsupported variation. We introduce the scene-relevant observation quotient, a representation target induced by sensing-supported distinguishability after nuisance canonicalization, and develop Observation-Quotient Tucker-Structured Autoencoding (OQ-TSAE), a scene-nuisance factorized framework with diagnostics for false distinction, false merge, nuisance sensitivity, and latent ordering consistency. Experiments on a controlled benchmark show that quotient-consistent supervision improves representation-correctness diagnostics over reconstruction-oriented, metric-learning, and contrastive-learning baselines. Sensitivity, perturbation, and ablation studies show the importance of quotient-aligned supervision, reliable quotient relations, and quotient geometry. Complementary real-radar experiments show that a reconstruction-only OQ-TSAE variant retains competitive downstream utility, robustness under observation degradation, and low seed-to-seed variability. These results suggest that sensor-conditioned representations should be evaluated not only by predictive utility, but also by whether their latent geometry preserves sensing-justified scene distinctions.

RePAIR: Predictive Self-Supervised Representation Learning in Chess

In this paper, we introduce Representation Prediction via Autoencoding using Iterative Refinement (RePAIR) - a novel self-supervised representation learning architecture that synthesizes Masked Autoencoders (MAE), Joint Embedding Predictive Architectures (JEPA), and Bidirectional Encoder Representations from Transformers (BERT). We demonstrate how it can be used to encode objects in sequential data like consecutive chess positions into compact yet meaningful representations. The basic principle of the architecture is to mask large portions of a sequence of latent states, similar to BERT and MAE. Then, we apply a lightweight Predictor to the latent representations that repairs gaps in the sequence in a lower-dimensional embedding space akin to JEPA. Our experiments in the domain of chess show that the Encoder refines the board representations such that meaningful chess concepts emerge clustered in the latent space. Furthermore, reconstructions of the masked board states show that the model is able to reason about the piece movements without relying on costly reinforcement learning methods. Lastly, we find that the resulting representation space allows for quick and intuitive dissections of chess games by observing the game path trajectories in this semantically rich space.

Bootstrap Theory of Representational Emergence (TBER): Explanatory Insufficiency, Transition Regimes, and the Emergence of New Representational Levels

Representation learning is central to modern machine learning, yet most research focuses on optimizing representations after a framework has been selected. The Bootstrap Theory of Representational Emergence (TBER) addresses a prior question: when does a new representational level become necessary? Version 4 identifies explanatory insufficiency as a positive epistemic signal for representational transition. A representation may remain useful while becoming unable to make relevant relations, transformations, distinctions, or organizational properties intelligible. TBER distinguishes two dimensions. Explanatory insufficiency may be descriptive, transformational, or related to generalization. The resulting response may belong to a local-corrective, representationally resolutive, or structurally recurrent regime. The bootstrap process is recursive: stabilized representations enable observation; anomalies expose persistent insufficiencies; candidate re-representations are generated; discriminating tests constrain them; surviving representations undergo provisional stabilization and closure assessment. Formal cases such as Kaprekar's routine and Gödelian incompleteness are used only as boundary examples of distinct transition regimes, not as proofs of TBER or models of physical or biological dynamics. The framework concerns transitions between scientific, mathematical, or computational representations. It has implications for representation learning, latent spaces, foundation models, world models, adaptive biological systems, scientific discovery, and autonomous AI. TBER suggests that future intelligent systems should not only learn representations, but also diagnose their limits, determine when re-representation is warranted, test alternatives, and recognize whether a limitation is locally resolved or structurally recurrent.