ATLAS: A Foundation Neural Sampler for Amorphous Materials

Amorphous materials exhibit exceptional mechanical and functional properties, yet their rugged energy landscapes are notoriously difficult to sample. Below the glass-transition temperature, conventional molecular dynamics and Monte Carlo become inefficient because equilibration relies on rare barrier-crossing events, while data-driven generative models are constrained by scarce and biased reference ensembles. Here, we introduce ATLAS, an efficient sampler that learns a diffusion process to generate Boltzmann-distributed amorphous structures directly from a target energy function. Parameterized by an equivariant graph neural network, ATLAS generalizes across system size, temperature, and composition. By exploiting the time reversal of the diffusion process, it enables efficient estimation of thermodynamic quantities and steering toward target observables. In two-dimensional Kob-Andersen systems, ATLAS reproduces parallel tempering Markov chain Monte Carlo structural distributions, free energies and entropies, achieving below 0.2% free energy error in the low-temperature glass regime with over 500-fold fewer energy evaluations. In Cu-Zr and Cr-Co-Ni metallic glasses, ATLAS recovers experimentally observed short-range-order trends and steers structures toward prescribed order parameters and optimized bulk moduli. Moreover, composition-amortized pretraining outperforms composition-specific training from scratch, reduces inverse-design costs by several hundred-fold, and enables sampling with expensive universal machine learning interatomic potentials. Coupled to a large language model agent, ATLAS searches an eight-element space for high-entropy metallic glasses balancing stiffness and ductility, identifying a converged Pareto frontier within 480 oracle evaluations. Together, these results establish ATLAS as a foundation model for sampling, steering and designing amorphous materials.

Neural Non-Equilibrium Hamiltonian Monte Carlo for Corrected Boltzmann Sampling

Sampling from an unnormalized Boltzmann density requires proposals that move probability mass globally while retaining enough path-probability information for statistical correction. We introduce Neural Non-Equilibrium Hamiltonian Monte Carlo (NHMC), a train-then-correct learned Hamiltonian sampler. Starting from a tractable base distribution, NHMC learns stochastic Hamiltonian-style paths toward the target. Once training is complete, the learned proposal parameters are fixed; the proposal then generates complete paths and endpoint configurations, which are statistically corrected using the recorded non-equilibrium work. This dimensionless generalized work is determined by the probability ratio between the forward proposal path and a reverse reference path. During training, minimizing its mean reduces a path-space KL divergence and controls an upper bound on endpoint mismatch. During evaluation, the same quantity defines weights for self-normalized importance sampling on paths (path-SNIS), estimates normalizing constants or free-energy differences, and gives the acceptance ratio for path-space independent Metropolis--Hastings (path-IMH). We further derive a shared-bridge round-trip NHMC--MH kernel and prove that its configuration-space transition preserves the Boltzmann target. On double-well, finite-volume lattice $φ^4$, compact non-Abelian gauge, and Lennard--Jones cluster targets, the NHMC construction gives corrected estimates when path overlap is sufficient; when overlap is poor, weight degeneracy, low acceptance, and long autocorrelation expose proposal failure. We additionally report a molecular internal-coordinate feasibility study using a molecular-dynamics prior and learned-force path proposal.

B3O: Scalable Boltzmann Batch Bayesian Optimization

Modern engineering workflows increasingly rely on massive parallel simulation, driving the need for scalable, large-batch Bayesian Optimization (BO). Existing batch BO methods, however, incur large computational cost or rely on approximations that erode batch diversity. We propose B3O (Boltzmann Batch Bayesian Optimization), a framework that reframes batch generation as a pure sampling problem: drawing samples directly from the Boltzmann distribution defined by the acquisition function avoids the bottlenecks of existing large-batch methods. Theoretically, we prove that queries sampled from this distribution incur only negligible additional regret. Empirically, B3O outperforms existing batch BO methods on standard synthetic benchmarks and adapts robustly across complex applied tasks, including multi-objective electrode design and mixed-variable race car configuration.

Scalable Physics-Inspired Transformers for Spin Glasses

Efficient sampling of the Boltzmann distribution in frustrated spin glasses is central to statistical mechanics and combinatorial optimization. Despite advances in machine-learning-based approaches, two issues persist: limited understanding of why variational models fail to benefit from increased scale, unlike the monotonic scaling law of large language models; and high computational cost on large systems that negates advantages over classical sampling methods. Here, we develop a physics-inspired transformer with interpretable sparse attention and spin-tailored positional embeddings to address these challenges. By further leveraging FlashAttention for parallel ancestral sampling, it achieves up to two orders of magnitude speedup over vanilla variational autoregressive networks, enabling neural-network simulations of spin-glass systems to unprecedented sizes on a single GPU. It can resolve full probability distributions, free energies, and overlap statistics across temperatures, for Sherrington-Kirkpatrick and 2D or 3D Edwards-Anderson models, where existing machine-learning methods encounter limitations at certain temperatures. This framework thus establishes a scalable paradigm for frustrated spin-glass systems.