ADDA: a Modular Framework for Representing, Simulating and Assimilating Dynamics with End-to-end Differentiability

Data assimilation (DA) is an essential tool for prediction and understanding in the geosciences. DA combines simulation programs representing scientific knowledge with observations that constrain system dynamics, resulting in analyses and forecasts that incorporate both knowledge and data. DA tasks can be addressed with a diverse toolset, including variational, ensemble and learning-based methods. In particular, many recent works have proposed using automatic differentiation tools for variational, learning-based or hybrid methods. However, comprehensive comparisons across algorithms and dynamical systems remain challenging, due to the incompatibility of simulation and assimilation codes, inflexible handling of spatial and temporal discretizations, specialization of DA methods to specific simulations, and limited support for automatic differentiation and parallel computation in simulations. To address this challenge, we introduce Automatic Differentiation for Data Assimilation (ADDA), a software framework for defining and working with system states, simulations, observation schemes and DA methods. ADDA provides a powerful and flexible set of base classes for representing dynamical systems and observation operators, with support for collocated and staggered grids, unstructured meshes, Lagrangian state variables and irregular or continuous-time observations. Parallel processing and differentiability are first-class features, with support for batch axes and automatic differentiation throughout. ADDA is implemented in PyTorch library, but supports DA for JAX-based computation of dynamics and their gradients. To demonstrate its features, we further provide differentiable, ADDA-compatible implementations of 10 dynamical systems of various dimensionalities and scales, from which we design multiple illustrative DA examples. All of our code is publicly available at https://github.com/m-dml/ADDA.

Fast, accurate, and differentiable: a neural-network surrogate for NRSur7dq4 precessing binary black hole waveforms

We present a neural network surrogate model that emulates the NRSur7dq4 gravitational waveform model for precessing binary black hole mergers. The surrogate decomposes the waveform into constituent quantities and trains an independent multilayer perceptron (MLP) for each. We validate the surrogate against NRSur7dq4 on 10,000 waveforms spanning its full parameter space ($1 \leq q \leq 4$, $|χ_{A,B}| \leq 0.8$). For representative total masses between 60 and 300 $M_\odot$, median sky-averaged frequency-domain mismatches range from $8.0 \times 10^{-5}$ to $1.7 \times 10^{-4}$, with 95th percentiles below $10^{-3}$. On an NVIDIA L40S GPU the JAX surrogate evaluates a single waveform in about 1 ms end-to-end, roughly 10 times faster than the LALSimulation C implementation of NRSur7dq4, and sustains about 140 times the LALSimulation throughput at batch size 64, making it well suited for both low-latency parameter-estimation samplers and large-scale waveform generation. The full NRSur7dq4 NN waveform-to-likelihood pipeline is implemented in JAX and is differentiable. This is the first neural-network surrogate of a precessing numerical-relativity waveform model to combine validated NR-faithful accuracy with a fully differentiable, GPU-accelerated inference pipeline, enabling gradient-based inference approaches via automatic differentiation including Fisher information matrices, GPU-accelerated nested sampling, gradient-based MCMC and importance sampling.

CANNs: A Toolkit for Research on Continuous Attractor Neural Networks

Continuous attractor neural networks (CANNs) are the canonical computational framework for how the brain encodes continuous variables such as spatial position, head direction, and movement direction, and explain the activity of hippocampal place cells, entorhinal grid cells, and head-direction cells. CANN research, however, is fragmented: most results rest on lab-specific implementations, general-purpose simulators lack CANN-specific abstractions, and the path from spike trains to attractor geometry in real recordings lacks a standardized toolkit. Here, we present a comprehensive open-source toolkit that unifies the full CANN research workflow. It combines three tightly integrated components: 1) canns, a Python library on BrainPy/JAX that provides standardized 1D/2D CANNs, spike-frequency-adaptation variants, grid cell networks, hierarchical path-integration models, and brain-inspired attractor architectures, together with curated datasets, task generators, an analyzer module and trainer modules for biologically plausible plasticity; 2) canns-lib, a Rust acceleration backend delivering hundreds-of-times speedups for spatial-navigation workloads and modest gains for Ripser-based persistent homology; 3) ASA (Attractor Structure Analyzer), a PySide6 pipeline applying persistent homology and cohomology to experimental neural recordings to detect ring-like and toroidal attractor signatures in real data. The toolkit ships with full-detail reproducible pipelines that recover recent CANN results including SFA-driven anticipative tracking, theta sweeps in head-direction/place/grid systems, and hierarchical path integration.

Neural-Parameterized Cellular Automata for Wildfire Spread

Traditional wildfire models rely on rigid, low-dimensional parameters and static fuel maps, frequently underpredicting fire spread. To address this weakness, we introduce a hybrid deep-learning parameterized Probabilistic Cellular Automata (CA) framework implemented in JAX. Our approach employs a Multi-Scale Convolutional Neural Network to dynamically generate spatially varying parameters that govern fire-spread probability, wind alignment, and slope influence. This hybrid design captures complex, nonlinear environmental interactions while preserving the physical interpretability of the underlying three-state CA. The JAX implementation enables hardware acceleration and gradient-based parameter calibration. Evaluated on six large-scale wildfires in the western United States, the model maintains IoU > 0.6 over 72-hour forecast horizons after a 10-day data assimilation window during which the model is fitted incrementally to observed perimeters; the resulting forecast is a conditional projection of fire growth under the suppression regime already ncoded in those observations.

Accelerated Fourier SAT (AFSAT): Fully Realising a GPU-based Symmetric Pseudo-Boolean SAT Solver

We present Accelerated Fourier SAT (AFSAT), a GPU-accelerated solver for pseudo-Boolean satisfiability based on continuous local search (CLS). AFSAT realises the proof-of-concept approach, FastFourierSAT, into a fully-engineered solver supporting any heterogeneous mixture of symmetric constraint types and lengths within a single problem instance. Using the JAX compiler, AFSAT leverages pure function composition, automatic vectorisation, automatic differentiation, and just-in-time (JIT) compilation to perform massively parallel CLS across batches of candidate assignments. We demonstrate substantially improved numerical stability, runtime performance, and memory efficiency over the proof-of-concept. We achieve this by way of identifying and addressing various limitations that arise from memory latency and floating-point representation, as well as leveraging automatic parallelisation and compact representations. The inherent representational and stability limitations of floating point are partially addressed by a tailored discrete Fourier transform implementation. We achieve near-linear throughput when scaling to multiple accelerators via JAX array sharding.