Paper-to-code reproduction asks scientific AI agents to turn research papers into executable repositories that preserve the paper's method, protocol and artifacts. This is difficult because the specification is split: explicit paper content such as algorithms, metrics and artifacts is often lost across long agent trajectories, while implicit details such as framework defaults and conventions inherited from related work are absent from the paper. We introduce ReproAgent, a four-stage Prepare--Plan--Generate--Repair pipeline built around a persistent implementation contract with two channels: an implementation-requirement channel that turns paper snippets into code obligations, and a reference-evidence channel that retrieves content and structure evidence from related repositories. Both are bound to work packages, projected into file-level contracts, and consumed across generation and repair. On PaperBench Code-Dev, ReproAgent reaches the highest mean score among same-backbone scaffolds under both Claude-Sonnet-4.5 and Gemini-3-Flash. End-to-end channel ablations and per-paper cases support the contribution of both channels. Code and experimental artifacts are publicly available.
Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration. Existing works often reduce papers to abstracts, surface mentions, and flat \texttt{cites} edges, omitting key entities, claims, evidence, mechanisms, and method lineages essential for scientific reasoning. To this end, we introduce \textbf{Agents-K1}, an end-to-end knowledge orchestration pipeline that converts raw documents into agent-native scientific knowledge graphs. Agents-K1 integrates three components under a unifying theoretical foundation: a multimodal parser whose five-module schema captures entities, multimodal evidence, citations, and typed inter-entity relations across the full paper rather than abstracts alone; a 4B information-extraction backbone trained with GRPO under a rule-based reward; and a graphanything CLI, a tri-source agent interface that unifies web search, multimodal graph retrieval, and cross-document traversal. On top of this, we process 2.46 million scientific papers across six subjects to produce \textbf{Scholar-KG}, of which we release a one-million-paper subset, and the full Scholar-KG is accessible via the SCP link below. The same pipeline can be extended to general-domain corpora and to schema-conformant data synthesis. Extensive experiments demonstrate that Agents-K1 achieves superior performance in scientific information extraction, knowledge graph construction, and multi-hop scientific reasoning.