Multiscale Community-Based Fingerprinting of Signed Functional Networks

Objective: Recent studies demonstrate that functional connectomes contain subject-specific signatures, or \textit{fingerprints}, that can identify individuals across repeated sessions and tasks. Existing methods mostly rely on edge-level features that are sensitive to noise, difficult to interpret, and limited in their ability to generalize across tasks and datasets. Methods: We propose a multiscale community-based functional connectome fingerprinting framework that characterizes each individual by the mesoscale structure of their functional networks. We introduce a signed multilayer community detection framework that incorporates both correlated and anti-correlated brain activity to identify subject-specific community structures across tasks and sessions. Graph-theoretic metrics are then computed from the resulting joint community structures to derive low-dimensional community-level fingerprint representations. Results: The proposed framework is evaluated on 810 healthy control subjects from the Human Connectome Project (HCP). The results show that community-based fingerprints provide a reliable and interpretable substrate for individualized brain characterization across sessions and tasks. Conclusion: Mesoscale community structure provides meaningful and discriminative subject-specific fingerprints. Significance: The proposed framework offers a promising foundation for precision neuroimaging and personalized neuroscience applications.

Spectral graph clustering with inhomogeneous latent geometry

We study spectral clustering in the presence of a confounding latent geometry. The leading eigenvectors may then be dominated by the latent geometry rather than by the communities. Nevertheless, we show in a block latent-space model that communities can be recovered from eigenvectors deeper in the spectrum. We analyze the spectral properties of the adjacency matrix through a limiting integral operator and use its structure to develop DBSPEC, a density-based spectral clustering algorithm that requires only approximate localization of the informative eigenvalue and is robust to poor eigenvalue separation. Crucially, this approach handles general latent geometries, overcoming restrictions to homogeneous toroidal models in prior works. Our theoretical predictions for the location of the informative eigenvalue notably align with observations in real-world experiments.

SCALE: Scientific Concept Aggregation via LLMs and Embeddings for Fine-Grained Taxonomy Extension

The increasing specialization of scientific research challenges existing classification systems, which provide effective representations of broad disciplines and research topics but often fail to capture the fine-grained conceptual structure of contemporary science. Author keywords offer greater specificity, but their fragmentation, redundancy, and terminological variability limit their use as stable units of knowledge organization. We introduce SCALE (Scientific Concept Aggregation via LLMs and Embeddings), a framework that extends the OpenAlex taxonomy with a new level of scientific Concepts below Topics. Rather than treating keywords as isolated descriptors, SCALE organizes semantically related terms into coherent and interpretable conceptual units and integrates them within the existing disciplinary hierarchy. The framework combines scientific text embeddings, large language models, and graph-based community detection to construct this additional layer at scale. The resulting taxonomy enables scientific literature to be read through an intermediate conceptual level between broad research topics and individual documents. This perspective provides a more detailed representation of how scientific knowledge is structured, specialized, and connected across disciplines. By transforming heterogeneous author terminology into reusable hierarchical units, SCALE offers a foundation for fine-grained scholarly classification, scientometric analysis, research monitoring, and future ontology development.

Learning and Clustering on Temporal Graphs: Principles, Primitives, and Pooling

This work focuses on the problem of learning on temporal graphs, with particular emphasis on the task of clustering: obtaining coarse-grained representations by aggregating information from nodes, edges, and temporal dynamics - a task related to pooling in machine learning on graphs, or community detection in network science. Although graph neural networks reach state-of-the-art performance across many downstream graph tasks, their advantage over established descriptive and inferential clustering algorithms is far less settled, especially under demands of efficiency and recovery accuracy. We frame this tension through three linked perspectives: principles, connecting graph learning and community detection through shared spectral foundations and detectability thresholds in stochastic block model regimes; primitives, making spectral clustering and multislice modularity optimization tractable through GPU-accelerated temporal backends; and pooling, viewing principled community detection as a theory-grounded coarse-graining operator for temporal graphs. Our results indicate that algorithmic methods remain the appropriate tool where attributes are absent or weak - scalability rather than accuracy being the binding obstacle - while neural models are most compelling when structural, temporal, and attribute signals align. By making temporal clustering scalable, GPU-accelerated primitives suggest a route toward theory-grounded pooling, while raising a central question: when does community-based coarse-graining preserve the dynamics needed for downstream learning tasks?

Accelerating Dynamic Graph Clustering on GPU Architectures with cuGraph

This work addresses community detection in temporal networks through GPU-accelerated extensions of spectral clustering and modularity-based algorithms originally designed for static graphs. Built on the NVIDIA RAPIDS ecosystem, the framework enables the characterization and tracking of communities in snapshot-based dynamic graphs, either by Leiden greedy optimization with multi-GPU support via Dask-based workload distribution, or eigendecomposition of a symmetric Bethe-Hessian operator. Our multislice modularity backend achieves up to roughly three orders of magnitude speedup over the CPU reference under an equal-work budget, depending on graph density and snapshot count, while preserving compatibility with existing graph analytics pipelines. We demonstrate its applicability on real-world and synthetic datasets, facilitating exploratory analysis of structural network properties over time. Such capabilities are relevant across several application domains, such as epidemic spreading, financial systems, cybersecurity, and trajectory and mobility analysis. We release our implementation as free and open-source software, including Python bindings through the NetworkX-Temporal library for ease of use and zero-code acceleration with existing codebases.

Semantic Networks as Clues: A Theoretical Foundation and Process Optimization for Semantic Network Construction

The subject matter of this paper is twofold. One is to review the theoretical foundation of a specific type of Semantic Networks (SNs) representing textual non-propositional knowledge. The other involves proposing a framework (ClueNetwork) for ranking candidate SNs generated through various Semantic Network Construction (SNC) processes for the type. In the first fold, it is clarified that the type serves as clues, not surrogates, of reality, making gold standards elusive. Then, it is discussed why this type nevertheless holds scientific legitimacy in terms of abduction. Grounded in this legitimacy, the three main stages of SNC, comprising Automatic Keyphrase Extraction (AKE), Edge Weighting (EW), and Community Detection (CD), are reviewed alongside their objectives and operations. In the second fold, evaluation criteria (comprising two established and one reformulated) for achieving the objectives are first defined and justified, followed by illustrative experiments based on the criteria. Thereafter, SNC is reformulated as a Process Optimization Problem (POP), and its global objective function that integrates the local criteria is defined and justified. Based on these, ClueNetwork is ultimately proposed.

Interpretable Unsupervised Community Detection with LLM-Symbolized Structured Processes

Community detection is a fundamental task in graph analytics that aims to identify cohesive groups of entities with similar behaviors or interests. Classic objective-driven methods struggle with complex graph structures, while deep-learning approaches improve performance at the expense of interpretability and rely on labeled data and training. Large language models (LLMs), with strong reasoning capabilities and world knowledge, are promising for interpretable, label-free community detection. To leverage these strengths, we propose LUCID, an LLM-guided, interpretable, training-free, and unsupervised community detection method. Inspired by phase-transition kinetics in natural systems, where complex structures emerge through initialization, merging, refinement, and selection, LUCID is designed as a four-stage pipeline. Within this pipeline, the LLM induces formal rules that translate implicit knowledge into explicit and interpretable logical structures. Specifically, (1) the Local-View Community Initialization stage encodes local graph structures using k-ego contexts and unsupervised node roles; (2) the Multi-factor Community Merge stage uses LLM-induced rules to iteratively merge local communities; (3) the Multi-grain Community Refinement stage applies LLM-induced coarse-to-fine rules in parallel to reduce boundary noise; and (4) the Global-view Community Selection stage identifies high-quality communities based on topological compactness and boundary clarity. Extensive experiments on real-world datasets demonstrate that LUCID, as an unsupervised approach, achieves state-of-the-art performance and consistently outperforms leading unsupervised and semi-supervised baselines.

Regularized Optimization on Grassmann Manifold: Theory, Algorithm and Applications

Spectral methods are among the most widely used techniques for community detection, clustering, and graph learning. Their performance, however, critically depends on the accurate estimation of the underlying spectral subspace and can deteriorate substantially in the presence of noise, outliers, or model perturbations. To address this limitation, we propose a Regularized Projection Matrix Approximation (RPMA) framework for robust estimation of rank-$K$ projection matrices. RPMA extends classical spectral projection by incorporating a regularization term, producing projection estimates that are more robust, sparse, and interpretable. We formulate the proposed model as an optimization problem on the manifold of rank-$K$ projection matrices and exploit its geometric equivalence to the Grassmann manifold. Based on this manifold characterization, we derive the first- and second-order optimality conditions, establish the local stability of the regularized leading eigenspace, and characterize the stability of the critical-point landscape under sufficiently small regularization. To efficiently solve the resulting nonconvex optimization problem, we develop a Riemannian gradient projection algorithm with backtracking line search, together with a more efficient Cayley--Sherman--Morrison--Woodbury (Cayley--SMW) gradient method that avoids repeated eigendecompositions. Extensive experiments on both synthetic and real-world datasets demonstrate that RPMA substantially improves the recovery accuracy of projection matrices and consistently outperforms conventional spectral projection methods for community detection and clustering under noisy environments.

Conceptual Networks for Cross-Linguistic Idiomatic Expressions: A Feature-Based Graph Approach

We present an interpretable network-based framework for representing idiomatic and figurative meaning across eight typologically diverse languages, totaling 160 conventional expressions, the large majority of which are idiomatic. Each expression is annotated with binary conceptual features (containment, concealment, emotional, social, etc.) derived from cognitive-linguistic theory, and pairwise Jaccard similarities define a weighted graph. Community detection reveals that idioms cluster by conceptual schema rather than by language, producing a structure consistent with cognitive-linguistic predictions. The conceptual network captures unique semantic information not present in distributional embeddings, can be scaled via automatic annotation with LLMs, improves downstream idiom detection, and remains robust when enriched with corpus frequencies. Cross-lingual transfer experiments show that conceptual proximity alone can identify acceptable translation equivalents across five language families, with substantial gains over embedding-based baselines. Ablation studies demonstrate that all three feature dimensions -- schemas, roles, and valence -- contribute non-redundantly to both the network's organizational properties and its performance on idiom detection, and that specific graph-derived signals (community membership, neighbor similarity) are particularly informative. The framework offers an interpretable, cross-linguistically stable representation of idiomatic meaning, combining theoretical grounding with practical utility.

Near-optimal node-private community estimation in polynomial-time

In this paper, we resolve an open question of Klopp & Zadik (2026) by providing a high-probability polynomial-time, node-private algorithm which nearly matches the performance of their exponential-time node-private algorithm for exact recovery in stochastic block models. Our result involves an explicitly constructed Lipschitz surrogate for the penalized likelihood function, as well as a carefully devised accept-reject algorithm that samples community labels from the corresponding exponential mechanism in polynomial-time. We rigorously analyze the privacy, runtime, and utility of our proposed algorithm, showing that even when the number of communities K grows logarithmically with the number of nodes n, we can achieve the minimax rates for exact recovery with the privacy parameter epsilon growing as log(n), thus matching known lower bounds on the cost of privacy for this setting.

Breaking Structural Isolation: Scalable Graph Clustering via Community-Aware Sampling and Structural Entropy

Unsupervised graph clustering is a fundamental technique for uncovering underlying semantic patterns in large-scale networks. Although Graph Contrastive Learning has demonstrated promising performance, existing methods often suffer from the "structural isolation" issue during mini-batch training, making it challenging to capture cohesive community structures that characterize the global topological distribution. To address these challenges, we propose SCISE, a Scalable unsupervised graph Clustering framework that preserves structural Integrity by synergizing community-aware sampling with constrained Structural Entropy. Specifically, we first introduce the Structural Entropy Community Constraint operator (SECC), which optimizes structural information within a constrained solution space to mitigate community fragmentation and enhance partition cohesion. Second, to prevent global information loss during batch training, we design a Community-Aware Sampling Expansion (CSampE) mechanism that incorporates the community context of target nodes into sampling batches, effectively breaking structural barriers and preserving topological integrity. Finally, we devise a Structural Contrastive Learning (StructCL) module that refines edge weights based on intra-batch structural similarity, guiding the encoder to learn representations in a higher-order structural space. Extensive experiments on six mainstream benchmark datasets demonstrate that SCISE significantly outperforms state-of-the-art algorithms, with ablation studies and robustness analyses further validating its effectiveness and reliability for real-world large-scale graphs.

Curvature-Guided Sheaf Diffusion for Unsupervised Community Detection on Heterophilic Graphs

Detecting communities in heterophilic graphs -- where connected nodes often belong to different classes -- is hard for unsupervised methods: classical modularity and spectral methods are feature agnostic, while deep graph-clustering methods rely on contrastive or generative machinery that is opaque. We propose Curvature-Guided Sheaf Diffusion (CGSD), a fully unsupervised community-detection algorithm that uses the discrete Forman--Ricci curvature of each edge as its single topological signal, propagated through every stage of an end-to-end pipeline. CGSD makes three concrete contributions: (i)~a curvature-gated sheaf-diffusion encoder that gates edge messages by $σ(κ_e)$ and is trained from three label-free structural losses (modularity, anti-collapse, curvature-weighted reconstruction); (ii)~a curvature-aware spectral clusterer (CSpec) that re-weights the $k$-NN affinity of the embedding by $σ(ακ_{e^*})$ before Ng--Jordan--Weiss; and (iii)~a unified label-free evaluation against nine truly-unsupervised baselines. On five heterophilic benchmarks (Cora, Cornell, Texas, Wisconsin, Chameleon), CGSD wins outright on Wisconsin and Chameleon and is competitive on the remaining three against nine unsupervised baselines. The gain over the strongest baseline is driven by the clusterer, not the encoder: on the same embedding, CSpec improves mean NMI from $0.091$ with $K$-Means to $0.107$ ($+15\%$, paired $t$-test $p=0.008$). The mechanism is interpretable: intra-community and inter-community curvature distributions are visibly separated. Code is open-sourced at https://github.com/woodywff/cgsd.

Progressive Self-Supervised Learning with Individualized Community Assignment for Brain Network Analysis

Brain networks exhibit a modular community structure that varies across individuals and neurological conditions. However, existing self-supervised learning (SSL) methods often overlook this heterogeneity, relying on generic masking strategies that fail to capture subject-specific functional organization. We propose BrainPICM, a self-supervised framework for brain network analysis via progressive individualized community aware masking. BrainPICM formulates ROI-to-community mapping as a progressive unbalanced optimal transport process, yielding soft assignments and per-ROI confidence scores. Guided by these confidence estimates, a curriculum-style masking strategy gradually incorporates low-confidence, potentially pathological regions into training, enabling the model to learn both stable modular structures and individual variations. Additionally, a deviation-aware aggregation module quantifies functional reorganization by measuring mass redistribution relative to a population template, enhancing interpretability and downstream prediction. Experiments on three fMRI datasets (ABIDE-I, ADHD-200, ADNI) show that BrainPICM consistently outperforms state-of-the-art supervised and SSL methods in diagnostic accuracy, indicating that explicitly injecting modular community structure into masked modeling yields more functionally consistent and generalizable representations. The source code for this approach will be released at https://github.com/Hrychen7/BrainPICM.

Alcmean's: Unsupervised community detection using local Laplacian, automatic detection of the number of centers

Community detection is a fundamental problem in the analysis of complex networks. It has applications across social, biological, and financial domains. Traditional algorithms such as Louvain, LPA, and modularity optimization often require manual parameter tuning. They also suffer from inaccurate cluster center selection and struggle with scalability. To address these challenges, we propose Automatic Laplacian Centrality Means (ALCMeans), a novel community detection algorithm. ALCMeans combines Laplacian energy-based automatic center identification with DeepWalk embeddings for robust node representation. Unlike existing Laplacian-based and clustering methods, ALCMeans eliminates the need to predefine the number of communities, enhances cluster center selection using structural importance, and leverages representation learning for more accurate and stable assignments. Experimental results on benchmark datasets demonstrate 10 to 20 percent higher NMI and ARI scores compared to Louvain, Newman-Girvan, LPA, Fast-Greedy, and a recent GNN-based competitor (MAGI, KDD 2024). Additional evaluations with modularity and F1-scores confirm the superiority of ALCMeans. Ablation studies highlight the critical contributions of each component. Despite its reliance on DeepWalk parameters and increased runtime relative to lightweight heuristics, ALCMeans consistently outperforms state-of-the-art methods. This makes it a promising tool for real-world network analysis.

Sharp Low-Degree Thresholds for Planted-vs-Planted Testing

We establish the first sharp thresholds for low-degree polynomial tests in planted-vs-planted settings, where the goal is to determine with vanishing error which of two structured planted mechanisms generated the observed data. We prove matching low-degree upper and lower bounds for counting communities in the planted submatrix and planted dense subgraph models. The resulting testing threshold coincides, down to the sharp constant, with the known low-degree recovery threshold. In contrast, the task of weak testing, where the goal is to outperform random guessing, does not have a sharp threshold but rather a smooth transition, which we identify. To prove our results, we develop a framework for planted-vs-planted testing that builds on a latent-variable expansion originating in low-degree recovery and employs new methods to identify and prune non-signal contributions.

Dynamic Hypergraph Representation Learning for Multivariate Time Series without Prior Knowledge

Hypergraphs have the capacity to capture higher-dimensional relationships among entities across various domains, making them a subject of growing interest within the research community for understanding the structure and dynamics of complex systems. However, a key challenge is the derivation of hypergraph representations from time series data in situations where the structure of the hypergraph is limited or absent. In this study, we propose a model that constructs a dynamic hypergraph representation for multivariate time series without relying on prior knowledge of the data. This is achieved by applying community detection to the time series and transforming the resulting communities, obtained through an attention mechanism, into a hypergraph using a clique-based technique. Hypergraph representations are derived from different time series datasets, and the resulting hypergraphs are then used by a Dynamic Hypergraph Attention Convolution Network (DHACN) for multivariate time series predictions. This research advances the field of hypergraph representation by introducing a novel approach that is better suited to uncover high-order relationships without prior knowledge.