Species Distribution Modelling (SDM) is essential for understanding how environmental conditions shape biodiversity, particularly for destructive pests such as the Desert Locust (Schistocerca gregaria), whose breeding dynamics are tightly coupled to rapidly evolving environmental conditions. Maxent has become the dominant method for presence-only data, but its reliance on a linear combination of hand chosen feature transforms limits its ability to capture the nonlinear, temporal relationships common in ecological monitoring, where covariates such as precipitation, soil moisture, and vegetation indices evolve meaningfully over time. Standard implementations flatten time-series covariates into independent features, discarding sequential structure that carries critical signal. We introduce RNN Maxent, an extension of the Maxent framework that replaces the fixed feature dictionary with a neural network, specifically a Gated Recurrent Unit (GRU), trained end to end via backpropagation. The approach preserves Maxent's presence only statistical foundations, background normalization, and probability calibration, differing only in that the nonlinearity is learned from data rather than fixed in advance. We apply RNN Maxent to map suitable habitat for the Desert Locust using 50 day environmental time series derived from ERA5 Land, MODIS, and Sentinel 3, maintaining a 7 day gap between covariates and presence records to yield forecasting behavior. Compared against standard Maxent, RNN Maxent improves performance across metrics (ROC AUC 0.862 std 0.036 vs. 0.792; F1 0.671 std 0.056 vs. 0.590).
Sundarabalan Balasubramanian, César Borja, Ana C. Murillo +5cs.CV
Submerged kelp forests are vital coastal ecosystems that support marine biodiversity and ecosystem dynamics, yet accurate underwater kelp segmentation remains challenging due to optical degradation, illumination variability, turbidity, overlapping vegetation, and complex benthic backgrounds. We systematically evaluated three deep learning semantic segmentation frameworks, ResNet34-U-Net, ResNet50-DeepLabV3, and a hybrid ResNet50-ASPP-Transformer architecture, for kelp detection using high-resolution underwater RGB imagery collected from northeastern U.S. coastal waters. A dataset of 3,395 SSeg assisted annotated image-mask pairs was developed for model training and validation, while geographically independent sites were used for quantitative and qualitative evaluation. All models used consistent preprocessing, augmentation, and evaluation protocols. On independent test data, ResNet50-DeepLabV3 achieved the highest Dice (0.7120) and Intersection over Union (IoU; 0.6267), followed by ResNet34 U Net (Dice 0.6868; IoU 0.5978). The hybrid ASPP Transformer achieved the highest pixel accuracy (0.8528) but lower Dice (0.6437) and IoU (0.5746). External qualitative evaluation further showed that DeepLabV3 produced more consistent segmentation across varying environmental conditions, image qualities, and benthic habitats. Overall, ResNet50-DeepLabV3, termed Kelp-O-Tron, provided the best balance of segmentation accuracy, robustness, and generalization. The dataset, annotation workflow, and comparative evaluation provide resources for advancing automated underwater habitat mapping and ecological monitoring.
Monitoring nature restoration at scale is an important but difficult ecological problem. Deep learning methods to analyze satellite image time series (SITS) have been widely used for land surface monitoring. In semi-natural grasslands - the habitat type in focus in this work - restoration outcomes develop gradually, yet satellite observations are influenced by weather, acquisition conditions, and processing artefacts, making it difficult to distinguish genuine restoration signals from unrelated temporal variation. In this work, we examine - to the best of our knowledge, for the first time - whether restoration status can be detected directly from satellite image time series by formulating pasture restoration as a binary deep learning classification problem. We evaluate two common SITS deep learning architectures on different Sentinel-2 image combinations, across 1,397 restored Swedish pastures and find that explicitly modeling intra-year variability and per-pasture normalization increases separability, reaching 0.88 accuracy for the best model. We further investigate our results and perform a targeted bias analysis finding that reliable deployment requires temporally balanced labels and evaluation protocols that explicitly test for year-related confounding. We therefore frame our contribution not as a solved restoration-monitoring system, but as a realistic case study of what works, what fails, and what future studies should control for. Code and models are available at https://github.com/aleksispi/ml-nature-resto.
Innocent Onyenonachi, Peter J. Lawerance, Nadia Kanwalcs.CV cs.AI
High-resolution RGB imagery acquired from low-altitude UAV surveys was processed through a modular pipeline incorporating transformer-based semantic segmentation, connected-component vegetation extraction, fine-grained species classification using a ConvNeXt architecture, and grid-based dominance scoring at 2x2m resolution. The framework targeted two ecologically significant halophytic grasses, Spartina maritima and Puccinellia maritima, and was trained using a curated and manually annotated UAV imagery, along with biodiversity imagery sourced from publicly accessible datasets. In order to identify these plants from the imagery, our segmentation yielded reliable species masks (mean IoU = 0.56; pixel-level accuracy = 0.96), while object-level classification achieved very good discrimination (F1 = 0.99). Dominance estimates closely matched quadrat-based field surveys, with mean absolute differences below 8%, preserving fine-scale spatial structure under realistic survey conditions. The developed system, named EcoVision, establishes a practical foundation for scalable, high-resolution salt marsh monitoring, demonstrating how AI-driven workflows can translate pixel-level predictions into ecologically interpretable metrics.
Muhammad Aamir, Matthew Wijers, Sangyun Shin +2cs.CV
Gait is a distinctive behavioral characteristic that enables non-invasive individual identification without requiring physical interaction with an animal. While gait-based analysis has been extensively studied in humans, its application to wildlife remains limited due to environmental variability and the lack of scalable identification methods. This paper presents a fully automated, video-based pipeline for wildlife gait analysis and individual identification using deep spatiotemporal representation learning. The proposed pipeline uses the Segment Anything Model 3 (SAM3) to generate high-quality RGB and binary silhouette masks, robustly isolating animals from complex natural backgrounds. Segmented video sequences are processed using a convolutional neural network (ResNet18) for spatial feature extraction and a transformer-based video model (VideoPrism) for temporal motion modeling. Both models are fine-tuned using a classification objective and subsequently used as feature extractors to generate discriminative gait representations. Cosine similarity is then used to compare gait signatures, enabling similarity-based clustering of individuals without reliance on physical markings or invasive tagging. Experiments conducted on multi-source wildlife video data across multiple species demonstrate strong intra-individual consistency and clear inter-individual separation. Quantitative results using cosine similarity distributions and silhouette scores confirm the effectiveness of the proposed method. These findings demonstrate that gait dynamics provide a viable, non-invasive approach for individual identification in wildlife and highlight the potential of video-based deep learning pipelines for scalable ecological monitoring.
Automated image recognition is increasingly used to scale ecological monitoring beyond manual annotation, yet ecologists lack evidence-based guidance on how much labelling effort reliable deployment at new sites requires. We present a decision framework quantifying the trade-off between labelling effort and recognition accuracy when transferring vision systems across marine habitats. The benchmark spans five datasets, three oceans, and three taxonomic groups (fish, corals, invertebrates), from tropical reefs in the Great Barrier Reef and French Polynesia to a temperate Danish fjord. We evaluated four recognition models (DINOv2, CLIP, ResNet-50, EfficientNet-B4) under four adaptation strategies (linear probing, LoRA, Visual Prompt Tuning, full fine-tuning) across three protocols: within-habitat transfer across 20 reef sites (240 runs), cross-dataset geographic transfer along a difficulty gradient (40 runs), and few-shot adaptation curves with 0-100 labelled samples per class (648 runs). Frozen self-supervised foundation features (DINOv2 + linear classifier, 1,538 trainable parameters) generalised to unseen reef sites at least as well as fully fine-tuned convolutional baselines four orders of magnitude larger; they learned species-diagnostic, habitat-invariant representations, whereas baselines encoded habitat-specific shortcuts that fail at new sites. As few as 10-20 labelled images per species sufficed to deploy reliable recognition at a new site, cutting annotation effort by roughly an order of magnitude. Solution. Programmes expanding to new sites can deploy reliable recognition by pairing a frozen, open foundation model (DINOv2) with a simple linear classifier and annotating only 10-20 images per species - roughly 1-4 hours per site. The framework lets programmes budget labelling effort against expected accuracy across sites, ecosystems, and platforms.