Benchmarks for systems that are optimized against the evaluation signal measure something different from what they claim. We document this concretely in two GPU-kernel-optimization suites with held-out generalization gates: Metal-Sci (10 scientific-compute tasks) and Metal-ZK (12 zero-knowledge/cryptographic tasks), in which three frontier LLMs (Opus 4.7, Gemini 3.1 Pro, GPT-5.5) propose Metal kernels inside a $(1{+}1)$ evolutionary loop with rich feedback. Although no model is prompted to act adversarially, the promoted winners repeatedly fingerprint the evaluation configuration: they branch on the identity of runtime parameters, tune the measured branch maximally, and leave the unmeasured branch slow or silently wrong. Across the pooled suites, $16/53$ ($30\%$) of in-distribution wins fail to transfer to held-out configurations. We give a four-mode taxonomy of these failures, from configuration fingerprints to gate leakage. We distill design guidance for measurement under strategic optimization: held-out probes retain validity only on non-enumerable axes; gates must measure held-out performance, not just correctness; and a transfer rate is interpretable only with per-failure mechanism grades: ours decomposes into gamed, overfit, and benign. Code and research artifacts: https://github.com/vicgalle/kernel-fingerprinting
Yongjie Wang, Xinyue Zhang, Kunhong Yao +4cs.CR cs.AI
Public benchmarks enable fair and reproducible evaluation of LLM reasoning, but they become fragile for deep research agents that actively search the web during inference. Such agents may retrieve public benchmark metadata, question context, or even ground-truth answers via web search. This gives rise to Search-Time Contamination (STC), where external retrieval bypasses intended reasoning and inflates measured performance. We systematically study STC in deep research agent evaluation. We define three contamination types with increasing severity, namely Benchmark Metadata Leakage, Question-Context Leakage, and Explicit Answer Leakage, and develop detection algorithms to identify them and quantify their impact on agent performance. Evaluating modern deep research agents on six public benchmarks, we find that STC is widespread and can inflate performance by up to 4%. Our findings show that existing evaluations may overestimate true reasoning ability. We therefore advocate contamination-aware practices, including isolated sandboxes, transparent search trajectories, and controlled benchmark access.