We introduce Xiaomi-TabLDM, a tabular large data foundation model for classification and regression via in-context learning, which delivers superior prediction accuracy without requiring task-specific fine-tuning. Pretrained exclusively on synthetic data generated from structural causal models (SCMs), our model enables more flexible context utilization and more efficient capacity scaling. i) A new performance standard. Strong regression performance across benchmarks: Xiaomi-TabLDM ranks 1st on OpenML-CTR23 and 2nd on regression across TALENT, TabArena, and BCCO, demonstrating consistently strong regression performance across four complementary benchmark suites. Favorable performance--efficiency trade-off: Xiaomi-TabLDM combines strong predictive performance with substantially lower computational cost. For example, on TabArena regression, it achieves the second-highest Elo while using 82% less training time and 68% less prediction time than the top-ranked TabFM. ii) Large-scale synthetic pretraining. Xiaomi-TabLDM expands the coverage and diversity of synthetic tabular data used for pretraining. We also adopt a three-stage training strategy together with dual-stream feature grouping, lightweight Attention Residual, and sparse Mixture-of-Experts, enabling Xiaomi-TabLDM to learn richer feature interactions and expert specialization across diverse tabular tasks. iii) Test-time scaling. Xiaomi-TabLDM further extends tabular prediction through test-time compute scaling, where allocating additional computation at inference time consistently improves predictive performance over the base model.
JoyIndustrial VisCAD Team, Linxin Cai, Qiuhe Hong +10cs.CV cs.CL
AI-assisted computer-aided design (CAD) for industrial products involves two challenging phases. Part-level generation maps diverse forms of user intent, including renders, text descriptions, 2D drawings, and real photographs, to executable programs in a CAD domain-specific language. Assembly-level generation must additionally handle interacting parts, plan mating relations, estimate poses, and place all parts correctly. Existing specialized CAD models are commonly trained on narrow input domains, such as renders or texts, and often generalize poorly, while general-purpose frontier models cover broader inputs but perform inconsistently across CAD domains. We present VisCAD, a foundation model suite designed to provide both broad generalization and strong CAD capability for realistic industrial products. At its core is VisCAD-M1, a 27B model trained through mid-training and post-training for part-level design generation. On PubCADBench and RealCADBench, VisCAD-M1 achieves the highest average part-level score among the evaluated models, reaching 0.5540 compared with 0.5496 for the strongest frontier model. Reusing VisCAD-M1 as a test-time verifier can further raise the score to 0.5797, an approximately 5 percent relative improvement over the previous state of the art. VisCAD also includes a domain-specific harness that leverages frontier models for complex assembly generation and demonstrates advantages over general-purpose harnesses in both quantitative and qualitative evaluations.
Power-outage planning requires scenarios before an event occurs. These scenarios must represent uncertainty in magnitude, timing, and duration while preserving temporal dependence. However, severe events are rare, and data from any single region contain few examples of extreme outage and restoration patterns. To address this challenge, we introduce OutageDiT, a foundation model for generating seven-day outage trajectories at quarter-hour resolution, trained on outage and weather records across the United States. Specifically, a condition encoder processes the historical context and known future covariates once per forecast, and a shallow flow decoder reuses the resulting horizon-aligned states to generate complete trajectories. The resulting samples support point forecasting, uncertainty quantification, and conditional event simulation within one deep generative model. Across outage forecasting benchmarks, OutageDiT improves forecast accuracy and scenario quality over strong baselines and supports zero-shot transfer to held-out regions. Together, these results position conditional outage simulation as a bridge from outage forecasting to operational planning under uncertainty.
Real-world robotic assembly at sub-millimeter tolerances demands spatial precision, compliant interaction, and robustness to contact failures. We present Facet-0, a robotic foundation model that predicts and values the contact consequences of its actions. Facet-0 unifies multimodal representation learning and reinforcement learning (RL) post-training around a joint action-wrench proposal: a causal wrench history is aligned with vision-language semantics and kinematic state, and flow matching generates each action chunk together with the future wrist-wrench profile it is expected to induce. Deployment rollouts train a distributional Action-Wrench Critic to distinguish motions with similar task progress but different contact outcomes, while phase-aware rewards and contact-selective credit concentrate policy improvement on decisive interactions. To accommodate part-specific dynamics, a lightweight bounded actor reuses the frozen representation for on-robot adaptation; RL remains defined over executable Cartesian actions, while an auxiliary wrench head preserves predictive, non-commanded action-contact coupling. Trained on ManuFacet-1K, a 1,000-hour force-synchronized corpus spanning three embodiments and multiple manufacturing cells, the bounded task-adapted system reaches 82% mean success on five sub-millimeter computer-assembly tasks, compared with 15% for the strongest baseline, with 0.5 mm placement accuracy and 50 ms command latency.
Athira J. Jacob, Puneet Sharma, Daniel Rueckertcs.CV
Cardiac magnetic resonance (CMR) imaging provides complementary information on cardiac anatomy, function, and tissue characterization across multiple sequences and views. In this work, we investigate foundation model pretraining for 2D CMR and introduce CMRVision, a CMR-specific foundation model trained using DINOv3-style self-supervised learning on a multi-center, multi-sequence cohort of 36 million CMR images. We systematically evaluate architectural and training design choices for domain-specific pretraining. CMRVision is evaluated on two downstream tasks: multi-task segmentation across cine, late gadolinium enhancement (LGE), and mapping sequences, and cine view classification. Our experiments show that CMR-specific pretraining, smaller patch sizes, and patch-level objectives consistently improve downstream performance. Across a multi-task segmentation benchmark, CMRVision achieved the strongest overall performance, outperforming prior natural-image (NI), medical-image, supervised, and CMR foundation model baselines. Improvements were modest but consistent across structures and sequences, with Dice scores ranging from 0.940-0.967 for LV and 0.855-0.905 for myocardium, and reaching 0.929 for RV, 0.920 for LA, and 0.931 for RA. The largest gains were observed for myocardium segmentation in LGE and mapping images. In a zero-shot segmentation task on unseen LGE long-axis views, the model achieved an average Dice score of 0.692, demonstrating cross-view generalization. For cine view classification, CMRVision achieved the highest average accuracy (0.906), compared to prior methods reported in the literature. These results highlight the potential of CMRVision to support robust and generalizable cardiac MRI analysis across multiple sequences and views.
Functional tissue units (FTUs), including tertiary lymphoid structures (TLSs), blood vessels, and glands, encode localized immune, vascular, and epithelial organization in histopathology. Accurate quantification of these structures is important for studying tissue architecture and disease-associated tissue organization. However, FTUs are frequently sparse, heterogeneous, and surrounded by large amounts of morphologically similar background tissue, making automated segmentation in whole-slide images (WSIs) challenging. We therefore developed FTU-Seek, a pathology foundation model-guided framework that treats morphology-aware negative-patch selection as a key component of sparse FTU segmentation. FTU-Seek uses frozen multi-depth features from the UNI pathology foundation model to train a patch-level classifier that distinguishes FTU-containing from FTU-absent tissue. Target-absent patches are subsequently ranked according to their predicted target-containing probabilities, and the highest-scoring hard negatives are selected through a static Top$K$ strategy to construct compact segmentation training sets. The framework was evaluated using five-fold cross-validation and internal test cohorts across TLS, blood-vessel, and gland segmentation tasks, with an additional independent 30-WSI held-out cohort for TLS. Positive-only, all-tissue, random-negative, and matched random Top$K$ sampling strategies served as comparators. Segmentation-derived phenotypes were further explored in external TCGA cohorts.
Designing models that generalize effectively in low- to medium-data regimes remains a primary challenge in medical machine learning, particularly for physiological time-series classification. While tabular foundation models such as TabPFN offer an attractive alternative to conventional fine-tuning through in-context learning, they are not designed to capture the temporal dependencies inherent to physiological signals. ~In this paper, we introduce TSPFN, a foundation model that redesigns TabPFN's architecture for time series data. TSPFN integrates structured temporal representations and positional embeddings to capture intra-sample temporal and channel dependencies. To fully leverage its spatio-temporal design, the model is pretrained on 140,000 real-world physiological time series across multiple medical domains. This yields a unified, generalizable framework capable of learning the specificities of medical time series. Experiments across diverse physiological benchmarks demonstrate that TSPFN consistently outperforms standard tabular baselines and TabPFN, and achieves superior cross-domain generalization compared to specialized deep time-series models. All our experiments, ablation studies, and pre-processing scheme are publicly available at https://github.com/Jeremstym/TSPFN
Much of human health and function unfolds beyond the clinic, through the movements of everyday life. Wrist-worn accelerometers capture these movements continuously, yet their rich signals are often reduced to a small set of predefined behavioural summary measures. Here, we present Sensori, a self-supervised foundation model that learns general-purpose health representations directly from 24 hours of raw tri-axial wrist movement. We developed and evaluated the model across four population-based cohorts from the United Kingdom, China and the United States, comprising 122,640 participants contributing 683,617 person-days of free-living recordings. Sensori condensed each day of movement into a representation that captured diverse movement behaviours, demographic characteristics, health axes and physical function. Evaluation in independent cohorts showed that these representations generalised across populations and measurement settings without retraining. When added to common clinical covariates, Sensori significantly improved prevalent disease classification for 52 of 102 eligible conditions (median delta AUROC, 0.060; range, 0.012-0.242) and incident disease risk prediction for 26 of 87 eligible conditions (median delta Uno's C-index, 0.064; range, 0.025-0.172), with the largest gains for neurological and psychiatric disorders. These findings establish 24-hour wrist movement as a rich and scalable source of health information, with the potential to support passive health monitoring and disease prediction at population scale.
Biological heterogeneity in Alzheimer's Disease (AD) poses a critical diagnostic challenge, particularly for traditional linear methods that fail to capture non-linear neural dynamics. To address this, we propose a diagnostic framework utilizing the Large Brain Model (LaBraM), pretrained on over 2,500 hours of EEG data. By integrating these high-dimensional latent embeddings with a non-linear Random Forest classifier, our approach effectively isolates robust disease markers. Under a rigorous subject-independent 5-fold cross-validation protocol, the method achieves an ROC-AUC of 89.36% +/- 3.49%, PR AUC of 81.45% +/- 4.43%, and Balanced Accuracy of 82.44% +/- 4.34% in distinguishing dementia patients from healthy controls. Notably, this performance uses only 8-second EEG segments, surpassing traditional spectral baselines, including band-power and parameterized oscillatory features (FOOOF). Post-hoc occlusion analysis confirms the model captures clinically validated biomarkers, specifically occipital-frontal Alpha and Theta rhythm degradation. Additional neurophysiological alignment analysis demonstrated that higher LaBraM-predicted dementia probability significantly correlated with worse cognitive performance, greater clinical severity, increased theta and alpha relative power, and higher aperiodic exponent. These findings demonstrate that deep latent representations extract clinically relevant signatures from noisy signals, enabling precise, rapid, and data-efficient diagnosis.
Human Activity Recognition (HAR) using inertial measurement units (IMUs) enables a wide range of applications, yet the field still lacks a unified model that can generalize across diverse subjects, devices, and activities. Training such a model is difficult due to two key challenges: sensing heterogeneity -- differences in sampling rates, channel configurations, and sensor placements -- and poor generalization to unseen activities and label vocabularies. We introduce HALO (Heterogeneity-Aware Language-aligned Open-set model), a domain-specific IMU foundation model that addresses both challenges through a two-stage training framework. Stage 1 pretrains the IMU encoder with heterogeneity-aware self-supervised learning, including adaptive-pooling tokenization, channel-independent feature extraction, and contextualized sensor conditioning that injects natural-language sensor descriptions into each channel embedding. Stage 2 aligns this IMU encoder with text embeddings via synonym-aware soft contrastive learning, enabling open-set recognition via cosine-similarity retrieval without per-dataset classifiers. Trained on 10 public HAR datasets and evaluated on 7 held-out datasets, HALO outperforms five state-of-the-art baselines on all 8 aggregate metrics, and still leads on 3 of 4 settings under baseline-matched inputs. Despite using only ~35M trainable parameters -- 10x fewer than the latest foundation model MOMENT (341.2M) -- HALO improves zero-shot open-set accuracy, measured over all 87 training labels, by 13.7 percentage points. On two further datasets with severe distribution shift, every model including HALO collapses zero-shot. A video demonstration of HALO's performance in real world is available at https://youtu.be/rooVKragtFU
Simulation-based inference (SBI) for parameter estimation is vulnerable to model misspecification: neural summaries and density estimators trained on a specific forward model typically fail when applied to data drawn from another model, or from real observations, and no training simulator can capture the full observational pipeline of a real measurement exactly. We show that a self-supervised Vision Transformer (ViT), pretrained label-free on a fast approximate simulator, produces transferable data summaries that generalize across simulators. Without retraining, it can be reused as a frozen encoder to infer astrophysical parameters from a completely different simulator that resolves the radiative transfer explicitly, on which it has never seen either data or parameters. As a concrete use case in 21cm cosmology, SKATR, a ViT pretrained with a Joint Embedding Predictive Architecture (JEPA), serves as a foundation model for reionization inference from upcoming SKA measurements: SKATR is pretrained once on 67k low-cost, noiseless semi-numerical 21cmFAST lightcones, then frozen and applied to hydrodynamical Loreli II lightcones, where a lightweight conditional flow matching head infers five astrophysical parameters; the encoder is never shown Loreli data, its parameters, or any noise. In our comparison, SKATR yields the most precise and best-calibrated posteriors across all five parameters, matching the accuracy of the fully-supervised in-domain baseline while requiring 2.6x fewer radiative-transfer simulations. Under realistic SKA AA* noise, only SKATR remains simultaneously accurate, informative, and calibrated, outperforming even a supervised baseline retrained from scratch on noisy data. Self-supervised pretraining on computationally efficient semi-numerical simulations is therefore a viable route to calibrated, simulator- and noise-agnostic reionization inference for the SKA-era.
Raphaël Bonnet-Guerrini, Johann Ioannou-Nikolaides, Inar Timiryasov +1astro-ph.HE cs.AI cs.LG hep-ex
We present a first application of sparse-autoencoder-based mechanistic interpretability to particle physics. Studying a neutrino foundation model pretrained on IceCube data and fine-tuned for direction reconstruction, we identify a validated atlas of physical concepts in the model representation, using a strict validation protocol consisting of held-out tests, matched nuisance controls, and replication across independent dictionary trainings. Causal interventions show that the direction head barely draws on this atlas. Motivated by this underused information, we train an uncertainty head on the same event-level representation to predict the model's angular reconstruction error. Unlike the direction head, it depends causally on quality and brightness features from the atlas. At $20\%$ selection efficiency, this interpretable estimator improves the median angular resolution from $20.2^\circ$ to $3.2^\circ$. These results suggest that mechanistic interpretability can reveal learned latent physics encoded within a model's internal representation and help design downstream tasks that exploit it.
Foundation models have transformed molecular property prediction, yet it remains unclear whether a molecular foundation model, fine-tuned on a single canonical olfactory prediction task, can learn representations that transfer across diverse machine olfaction problems. We investigate this question by fine-tuning Uni-Mol2 on the GS-LF benchmark for multi-label odor descriptor prediction and evaluating the resulting model, without additional deep-learning training, on four complementary downstream settings: cross-dataset odor descriptor prediction, odorous-versus-odorless classification, enantiomer evaluation, and odor mixture discriminability. The fine-tuned model matches or exceeds the performance of the state-of-the-art olfaction-specific baseline on the primary GS-LF benchmark and consistently transfers across these downstream evaluations. The enantiomer analysis further shows that three-dimensional molecular representations distinguish mirror-image molecules in a way that two-dimensional graph models fundamentally cannot, although accurately predicting the perceptual consequences of stereochemistry remains an open challenge. Together, these results support a train-once, transfer-across-tasks paradigm for machine olfaction and suggest that chemically pretrained molecular representations provide a strong foundation for transferable olfactory prediction.
Victor Nascimento Ribeiro, Jorge Guevara, Jorge Sebastian Moraga +7cs.CV cs.LG physics.ao-ph
High-resolution precipitation fields are essential for hydrological impact assessment, yet global climate model outputs are too coarse and biased for direct use. AI-based statistical downscaling with diffusion models offers a promising approach, but the mechanism by which large-scale atmospheric predictors condition generation remains largely unexplored. We investigate three conditioning strategies for a denoising diffusion probabilistic model applied to daily precipitation downscaling: channel concatenation of upsampled coarse predictors, cross-attention conditioning with a learned convolutional encoder, and cross-attention conditioning with the frozen encoder of the pretrained Prithvi WxC weather foundation model. All strategies are evaluated against an unconditioned baseline under identical conditions using probabilistic, distributional, spectral, and extreme-event metrics for the Colorado River Basin. Concatenation conditioning achieves the lowest point-wise CRPS and MSE, but tends to produce over-smoothed fields that suppress high-intensity events. In contrast, cross-attention conditioning provides substantially better distributional realism and modest improvements in spectral fidelity. Improvements are greatest for extremes: the Prithvi-WxC conditioned model retains over half of >100mm/day events, although estimates are uncertain due to limited samples. When trained on the full dataset, the learned convolutional model performs similarly to the foundation model-conditioned approach while requiring lower computational resources. However, the Prithvi-WxC-conditioned model achieves comparable performance with only five years of training data. These results indicate that cross-attention conditioning offers advantages over simple concatenation for probabilistic precipitation downscaling, and that pre-trained foundation model representations may offer benefits in data-limited settings.
EXAONE Tabular is a compact tabular foundation model family for classification and regression via in-context learning, producing predictions without dataset-specific gradient updates. Pretrained exclusively on a synthetic structural-causal-model (SCM) prior, its central contribution is an architecture-centered redesign of tabular in-context learning. Rather than compressing features into a fixed row embedding before a separate row-level learner, EXAONE Tabular interleaves feature-axis attention within each item with support-conditioned item-axis attention within each feature at every Transformer layer, mediated by item-summary and feature-summary tokens. Across four public benchmarks, EXAONE Tabular combines strong predictive performance with high efficiency. On TabArena, its 20.81M-parameter classification model ranks first overall, surpassing tuned ensembles and 4-hour AutoML pipelines, while regression reaches the performance regime of the 1.64B-parameter TabFM at roughly 1/11 the inference cost. On BCCO and TALENT, EXAONE Tabular ranks second in classification and first in regression. On ScoringBench, it achieves the best mean rank for both point-estimation and predictive-distribution quality, leading the $R^2$, RMSE, and CRPS evaluations. Together, these results establish EXAONE Tabular as a state-of-the-art compact tabular foundation model family, combining strong predictive performance across classification, point regression, and probabilistic regression with an efficient model design.
Phil R. Van-Lane, Joshua S. Speagle, Ryan Cloutier +3astro-ph.SR astro-ph.GA astro-ph.IM cs.LG
Main sequence stars of spectral types late F through M exhibit systematic variability in photometric light curves, particularly when they are young. Rotational modulation of starspots manifests as quasi-sinusoidal variability, which enables the measurement of rotation periods. Variability can also be stochastic, as in stellar flaring. However, since measurements of stochastic processes depend on the time of observation, they are typically noisier. Considering that different manifestations of variability have unique observational nuances, models that naturally unify these are incredibly useful for stellar characterization. Towards this goal, we have developed EncoTESS: a Time Series Foundation Model (TSFM) trained on a subset of TESS 2-min light curves. EncoTESS is specifically designed to handle the observational noise, heteroskedastic measurements, irregular sampling, and large data gaps common to TESS data. It is also ~1% of the size of a typical literature TSFM, so can be run easily on a modern laptop. EncoTESS encodes light curves into a fixed-size latent parameter space, which can be used to infer physical stellar properties and recovers light curve summary statistics well. EncoTESS outperforms rotation period and variability amplitude as age indicators for stars that have not converged onto the slow rotator sequence yet; broadly these include K and M stars less than ~100 Myr, and M stars less than ~1 Gyr. We focus on age inference as an application of EncoTESS in this work, but other downstream tasks such as stellar classification could also be explored. The architecture of EncoTESS enables its future extension to TESS light curves of all cadences, and additional surveys such as Kepler and the upcoming PLATO mission. The core EncoTESS framework and library of encodings produced for the stars used in this work are publicly available at https://github.com/philvanlane/encotess.
Juntao Fang, Shifeng Xie, Ruichu Cai +6cs.LG cs.AI stat.ML
Time series classification underpins applications in healthcare, sensing, and industrial monitoring. Although time series foundation models support forecasting and transferable representation learning, classification still typically requires fitting a task-specific classifier on each target dataset, while individual channels of multivariate inputs are often encoded independently. We introduce ChorusTIC, a classification-native foundation model for in-context classification across heterogeneous channel configurations without target-task parameter updates. ChorusTIC combines episode-consistent Random Subchannel Slot Concatenation with a shared dual-axis encoder to model temporal and cross-channel interactions and map variable channel configurations into a fixed-width representation independent of the original channel count. It then calibrates feature axes using context-derived distributions and predicts query labels through leakage-protected in-context learning. We pretrain ChorusTIC solely on synthetic labeled episodes comprising context and query sets that share a task background, with classes distinguished by sparse temporal or cross-channel rules. Evaluations on the complete UEA-30 and UCR-128 archives show strong full-context and low-label performance without target-specific classifier fitting.
Byte-space Action Recognition (BAR) aims to recognize human actions directly from compressed image bitstreams without any pixel decoding. By operating entirely in byte space, BAR is inherently independent of file integrity and pixel-level reconstruction, making it naturally applicable to privacy-sensitive scenarios and robust against bitstream corruption. In this paper, we propose ByteAction, a BAR foundation model that achieves accurate action recognition on corrupted image bitstreams. ByteAction follows a dual-view byte-level recognition framework. It constructs weakly and strongly corrupted bitstream views, which are augmented by Bitstream Pattern Augmentation (BPA) and encoded with a shared ByteFormer backbone. The model is optimized with both classification and corruption consistency objectives. Specifically, we propose Bitstream Pattern Augmentation (BPA), which reshapes one-dimensional byte sequences into two-dimensional byte matrix and applies region-level erasure to encourage the model to learn robust cross-region byte dependencies. We further propose a Corruption Consistency Training strategy that constrains the model to maintain stable predictions across different corruption severities through bidirectional KL divergence. Experiments on the image bitstream from Stanford40, PPMI, and PASCAL VOC 2012 Action demonstrate that ByteAction achieves state-of-the-art corruption robustness across all scenarios while maintaining competitive intact bitstream performance.
Florian Rottach, Sebastian Schieferdecker, William Rudman +2cs.LG cs.AI
Despite recent advances in molecular foundation models, several limitations remain, such as chemically invalid augmentations, modality collapse, and incomplete representation of biochemical environments. To address these challenges, we present \textbf{Mol-JEPA}, a scalable framework for learning molecular world models. Rather than relying on suboptimal molecular perturbations, our model uses modality masking to exploit information from molecular structures, cellular phenotypes, binding affinities, ADMET profiles, quantum chemistry simulations and other drug discovery data. Across various benchmarks, we show that the representations learned by Mol-JEPA deliver strong performance, demonstrating the value of incorporating biochemical context through latent space prediction.
Foundation models for astronomy are trained on survey pixels together with the catalogue products derived from those pixels. Those catalogues are incomplete at a measurable rate, and a model trained on both inherits that incompleteness as a systematic. We audit AION-1, a 39-modality transformer trained on more than 200 million objects, using causal interventions on its inputs. Holding the image tokens byte-identical and editing only the survey segmentation map changes every quantity the model reports -- flux, size, ellipticity, redshift -- by 110-4400 times a matched placebo. The mechanism is detection gating, presence at the field centre (r = 0.47), not the light the mask encloses (r = 0.30); across 322 real blends the model ignores how the pipeline partitioned the light (R = -0.006). Nor is the preference specific to that channel: contradicted catalogue photometry leaves the model nine times worse than supplying no metadata at all. The Legacy Survey pipeline leaves 3.68% of targets with no segment covering their position. Propagating that rate, with a miss represented by the fields the pipeline actually returns, shifts tomographic mean redshifts by a median 0.71 times the LSST DESC requirement over 40 assignments and exceeds it in 12; observed positional errors take the worst bin to 8.3 times. Drawing the misses by their measured magnitude dependence rather than uniformly does not change it. Spectroscopy removes the effect, withholding the detection channel removes it at no measurable cost, and the effect grows with model scale. Two further limits lie in the tokeniser: its image codec resolves 28 effective states on source patches against 934 for the spectrum codec, and the redshift readout is quantisation-limited. Sparse dictionaries are unreliable causal handles: across 15, recovery spans 26-75% and moves up to 18 points on the seed alone.
Multi-View Pedestrian Detection (MVPD) aims to detect pedestrians in the form of a bird's eye view map from multi-view images. Recent MVPD methods adopt a unified framework that projects 2D image features into a 3D world space and aggregates them into a single feature. Although they are effective, they struggle to generalize to unseen camera configurations during training due to two main issues. First, they are difficult to capture accurate visual geometry across views in unseen camera configurations. Second, they make detection models highly dependent on distortion patterns during training arising from their image feature projection. To address these, we leverage a visual geometric foundation model and propose MV2GF. This foundation model has exhibited strong generalization in capturing visual geometry across views and predicting accurate 3D attributes in diverse camera configurations. MV2GF fuses task-specific features with general-purpose geometric features extracted by the foundation model to effectively capture the visual geometry even in unseen camera configurations. Furthermore, MV2GF projects each pixel in the image features to an appropriate 3D location using 3D pointmaps predicted by the foundation model, preventing the detection model from depending on distortion patterns during training. Our experiments demonstrate the effectiveness of leveraging a visual geometric foundation model for MVPD and that MV2GF generalizes better than existing methods.
Madhumitha Venkatesh, Shanawaj S Madarkar, Konda Reddy Mopurics.CV
We introduce BrainNorm, a normative foundation model, trained and tested on ~66,000 T1-weighted structural MRI (T1w sMRI) scans. By leveraging language-image style contrastive pretraining on healthy cohorts across ages, BrainNorm learns a Semantic Atlas Latent space (SAL), where each scan is represented as a set of atlas-parcel embeddings. This yields parcel-specific healthy aging template trajectories that support age-consistent template matching and localized deviation scoring relative to a subject's chronological age. Across 6 downstream cohorts, BrainNorm demonstrates generalization evaluated across 25 task-setting combinations spanning age estimation, brain-age gap estimation, parcel identification, and single- & multi-disease classification tasks under direct inference, zero-shot, few-shot & full-data linear-probe settings. The resulting deviation patterns in SAL space enable zero-shot tasks for disease prediction using parcel-wise abnormalities. Fine-tuning on healthy-only cohorts of downstream datasets further improves the performance of various tasks. Across all classification tasks, linear probing on BrainNorm's frozen embeddings outperforms 9 baselines finetuned under end-to-end supervision. Furthermore, the localized deviations identified by BrainNorm across various neurodegenerative disorders closely align with established neurodegeneration pathology in clinical literature.
Xiang Li, Yuqi Wang, Casey C. Heirman +2cs.CV cs.LG
Cell mimicry arises when different cell types appear morphologically similar. Human pathologists resolve this ambiguity using surrounding tissue context, whereas current vision models either lack contextual reasoning (cell foundation models) or cannot operate at the cell level (pathology MLLMs). We present Loki-OT, which propagates region-level tissue reasoning to individual cell predictions via Unbalanced Optimal Transport, using MLLM-derived density priors as soft guidance for ambiguous cell reassignment. Loki-OT is motivated by the observation that pretrained cell foundation model features already encode discriminative information, including tissue context, but standard cell-level supervision fails to use tissue context effectively. The resulting transport plan is distilled into a lightweight student MLP classifier that learns context-aware decision boundaries within the pretrained feature space. On the independent TCGA-BRCA cohort, Loki-OT achieved lower patient-level MAE than the fully supervised in-domain PanopTILs classifier and improved F1 in epithelium-rich mimicry tissues, using 278 weak region-level MLLM estimates built on a general-domain cell foundation model. Code: https://github.com/xiangli980/Lymphocyte_Mimicry_Correction_via_Loki_OT
Identifying cell types directly from routine haematoxylin and eosin (H&E) histology would enable single-cell analysis at scale, but training such models has relied on manual pathologist annotations, which are slow, expensive and unreliable for many cell types. We instead supervise morphology with molecules. Imaging-based spatial transcriptomics profiles individual cells in situ on a section that can afterwards be stained with H&E, so that molecular identity and morphology are observed for the same physical cell. We assembled 81 such paired Xenium sections spanning 16 organs, derived per-cell labels by clustering, marker-gene annotation, organ-wise human review and quality control, and mapped them onto the cell types commonly reported in each organ. This yielded 15.4 million cells, each with a paired H&E image patch and one of 23 cell types, on which we trained CytoFormer, a cell foundation model with a multi-task, per-organ classification head. On spatially held-out tissue CytoFormer reached an accuracy of 0.85 and a macro-F1 of 0.78 across all 16 organs, and its predictions reproduced the tissue architecture of an entire held-out section. The representation also transfers: with the encoder frozen, a linear head on CytoFormer features performed better than six pathology foundation models on four expert-annotated benchmarks, including on organs and cell types that were not part of pretraining. Finally, in an interactive active-learning setting, CytoFormer's embeddings are markedly more label-efficient than existing pathology foundation models, detecting normal epithelium amid look-alike tumour with an F1 of 0.82 from only a few annotations and leading the strongest baseline by 0.13 in F1. CytoFormer turns paired H&E and spatial transcriptomics into a reusable, label-efficient representation for cell-level analysis of routine histology.
Simon Ellershaw, Christopher Tomlinson, Zeljko Kraljevic +6cs.LG cs.AI
Foresight-England (Foresight-E) is the first national-scale generative foundation model of electronic health records (EHRs), developed as a research pilot strictly for COVID-19 research. We evaluated its ability to model the direct and indirect effects of the pandemic. Trained from scratch entirely within the NHS England Secure Data Environment, Foresight-E is a 243-million-parameter transformer decoder. It was trained and evaluated on de-identified, longitudinal EHRs of approximately 61 million individuals, integrating primary/secondary care, death registrations, and COVID-19 data. Training and validation used a 90% subset (54.9 million) spanning November 2018 to December 2022; the remaining 10% (6.1 million) was held out for evaluation. Foresight-E models patient timelines autoregressively, predicting the next medical event given their prior history. At inference, it operates zero-shot, predicting any concept in its ~40,000-code vocabulary without task-specific training. Our tokenisation scheme retains the clinical granularity of ICD-10, OPCS-4, and SNOMED CT codes, jointly representing absolute and relative timing. We designed an evaluation framework for 30-day COVID-19 hospitalisation and mortality, including subgroup analyses by demographic factors and vaccination status. To assess generalisation to unseen future data and the pandemic's indirect effects, we tested the model on medical events from 2023 (beyond its training period), benchmarking against logistic regression and XGBoost. As detailed in the Project Status section, NHS England has paused access to data for the Foresight-E project, meaning quantitative results are currently unavailable. Instead, we share our strategy for tokenisation, architecture, training, inference, and evaluation as a methodological template and case study in the challenges of building population-scale EHR foundation models.
J. Raphael Schäfer, Kai Geissler, Till Nicke +27cs.CV cs.LG
Medical foundation models improve generalization when training AI models with limited labeled data, but remain confined to a single specialty, such as pathology or radiology, and to either sparse or dense outputs, such as classification or segmentation. Here, we present CoM$^3$eT (Co-representation Multidimensional Multitask Medical Transformer), a medical vision foundation model that unifies pathology and radiology, sparse and dense predictions, and two- and higher-dimensional inputs by modeling multidimensional context with attention. CoM$^3$eT outperformed other medical foundation models in an open competition spanning five tomographic, four whole-specimen, and three two-dimensional datasets, covering sparse and dense prediction tasks as well as report generation. When adapted across diverse clinical applications, training fewer than 2.5% of parameters achieved performance comparable to full fine-tuning, enabling research without access to high-performance GPU clusters. Applied to federated learning across hospitals, this approach achieved performance comparable to pooled-data training over internet connections and with consumer-grade hardware.
Syed Abdul Haseeb Qadri, Bjarne C. Hiller, Felix Blanke +7cs.LG
Cytometry measures the complex characteristics of single cells (e.g., counts and protein expression of immune cells) and is widely used across immunological research and clinical settings. However, cytometry data is highly heterogeneous and unstandardized due to experimental protocols and the choice of measured features. While machine learning methods hold the potential to gain deeper insights into cell biology, these challenges make them difficult to apply and transfer across studies. Recent advances in foundation models can alleviate these issues, but corresponding approaches are still scarce in this field. To address this, we provide CytoBERT, a publicly available, open-source, open-weight foundation model for single-cell cytometry data with variable marker panels. CytoBERT is pretrained in a self-supervised manner on a large-scale cytometry corpus (15 human datasets with heterogeneous marker panels and more than 50 million cells) curated through marker standardization, enabling it to learn transferable inter-marker relationships within cells. Fine-tuning CytoBERT for sample-level classification demonstrates that transfer learning across heterogeneous cytometry datasets is feasible, providing a starting point for scalable, generalizable cytometry analysis. Code is available at GitHub.
We introduce Mobius-v0, an architecture that comprises a globally shared Memory (FFN) that stores knowledge vectors and multiple Reasoners (Self-Attn) that iteratively achieve compositional reasoning. Using hidden states as cache and carrier, reasoners repeatedly query memory for required knowledge-vectors, while the knowledge is transmitted back to reasoning operators. Through this knowledge-reasoning-separation architecture, Mobius achieves better knowledge compression and reasoning efficiency. Built upon Mobius-v0 architecture: 1) Our 7B model trained-from-scratch achieves similar downstream score as a 7B Transformer baseline with 62.6% of baseline's training data. 2) Our Intern-S2-Mobius, continually-pretrained from Qwen3.5-35B, achieves similar downstream score while delivering nearly 4x end-to-end inference speedup.
Infrared (IR) spectroscopy is widely used for chemical sensing, but extracting reliable chemical information from spectra remains challenging. Conventional interpretation is labor-intensive, relies on prior knowledge and reference spectra, and is difficult to scale, whereas most machine-learning methods are tailored to individual tasks or datasets, require large labeled training sets, and transfer poorly across analytical objectives and experimental datasets. Here we introduce UltraIR, a foundation model for IR spectroscopy with more than 100 million parameters that enables simulation-to-real transfer learning for chemical sensing and analysis from molecules to complex samples. UltraIR is pretrained on approximately 60 million simulated IR spectra using spectral reconstruction, molecular fingerprint similarity alignment, and functional-group prediction, then adapted to downstream objectives with task-specific labels or targets. Across functional-group prediction, molecular structure elucidation, physicochemical property prediction, mixture-component identification and quantification, bacterial classification, medicinal-herb geographic origin traceability and constituent quantification, microplastics classification, and soil property prediction, UltraIR outperforms conventional machine-learning and task-specific deep-learning baselines. It performs strongly with limited labeled experimental spectra and in zero-shot inference for the same analytical task across Fourier-transform infrared spectrometers and laboratories, providing a route to adaptable, data-efficient chemical sensing from complex real-world samples.
Electroencephalography (EEG) decoding models often generalize poorly across datasets and subjects due to domain shifts in acquisition protocols and individual neurophysiology. We propose EEG-PRIME, a two-stage EEG foundation model for cross-dataset multi-task decoding. EEG-PRIME combines masked pretraining with prototype-aligned instruction tuning to enable instruction-aware and subject-invariant decoding across diverse BCI paradigms. During pretraining, an EEG encoder learns transferable representations through masked reconstruction with frequency-cutoff spectral augmentation. During instruction tuning, EEG-PRIME incorporates task-semantic, dataset-specific, and subject-invariant conditioning. The resulting conditioning signal modulates the Q-Former through Layer-wise Query Modulation, while frozen text embeddings of class labels serve as prototypes for cosine-similarity-based prediction across heterogeneous label spaces. Experiments on sixteen datasets covering motor imagery, emotion recognition, ADHD detection, covert speech, and mental workload show consistent improvements over state-of-the-art baselines and prior EEG foundation models under cross-subject settings. On two additional held-out datasets, EEG-PRIME achieves balanced accuracy comparable to within-session calibration models without target-domain optimization, calibration, or linear probing, demonstrating promising zero-shot transfer capability.