Stochastic masking, cropping, or modality removal makes deterministic reconstruction an incomplete target: one observation can admit many clean completions. This work takes the corresponding posterior $P(X\mid C)$ as the common statistical object for conditional generation and generatively sufficient representation learning. Drift Variation autoencoder trains a masked encoder $Z=E(C)$ and a conditional flow decoder with one clean-prediction Flow Matching loss. The analysis first decomposes the ideal conditional KL into generator approximation and the representation deficiency $I(X;C\mid Z)$. It then derives orthogonal risk decompositions for conditional Flow Matching. For an affine Gaussian path, the clean-prediction representation gap is zero if and only if $P(X\mid Z)=P(X\mid C)$. Thus the encoder-dependent excess clean-prediction risk induced by Flow Matching and the profiled ideal conditional KL have the same posterior-sufficient zero set, without being numerically equal objectives. An exact conditional field with a zero-noise endpoint then generates $P(X\mid Z)$ and hence $P(X\mid C)$ at a joint ideal optimum. The result extends to continuous multimodal product spaces when the complete modality tuple remains the Flow target for every observation mask. On CrossGeom-4, an 18-run controlled benchmark, observable factors have linear-probe $R^2$ of $0.9990$-$0.9992$, shuffling the joint model's encoder condition increases conditional error by $13.5\times$-$15.7\times$, and joint target attention reduces disagreement on an unobserved factor shared by two outputs by $90.1$-$92.8\%$ relative to independent target decoders. Visible modalities are also generated and reconstructed, directly validating the full-tuple objective. Unconditional mode balance remains imperfect, delimiting the empirical claim to a controlled multimodal proof of concept.
Continuous physiological time series underpin modern clinical monitoring, yet many of the most informative signals are invasive, expensive, or simply unavailable for a given patient. Conditional generation offers a remedy: an absent signal can be synthesized from co-recorded signals and routine clinical variables. Existing generators, however, are built around a single conditioning modality and degrade when forced to handle the heterogeneous, irregularly missing mix of time-variant signals and static covariates seen in practice. We propose ReCoGen (Represent Conditions, then Generate), a two-stage framework that decouples multimodal condition representation from target generation. Stage I trains one masked autoencoder per modality, distilling each time-variant condition into a compact and missingness-tolerant token sequence. Stage II trains a flow-matching generator that fuses these tokens with static conditions to synthesize the target signal. Across three physiological benchmarks, including continuous glucose monitoring on AI-READI and arterial blood pressure generation on MIMIC-III and MIMIC-IV, ReCoGen attains the best downstream utility on all sixteen (dataset, task, metric) settings, surpassing six representative conditional generators; on thirteen of them its utility also reaches or exceeds the utility measured on the real signal, a reference we read as an approximate anchor rather than a ceiling. Ablations trace the gains to the conditioning path: learnable cross-attention over the frozen per-modality encoders, and a dual token-plus-AdaLN route for the static conditions. ReCoGen thus turns routinely collected signals into informative surrogates for invasive or unavailable ones, a step toward less invasive, lower-cost continuous clinical monitoring.
Decades of orbital missions have produced multi-modal remote sensing data for the Moon, spanning optical imagery, spectroscopy, thermal emission, radar, gravity, and elemental composition. Yet these datasets remain fragmented across archives, and no benchmark exists for evaluating machine learning on lunar data. We introduce Moonstone, the first multi-modal foundation model benchmark for lunar remote sensing. Our contributions are: (1) a 28-channel, 128 pixels-per-degree (~237 m) global lunar pretraining dataset from seven instrument families across five missions, (2) MG-MAE, a modality-grouped masked autoencoder with per-group convolutional tokenizers, a shared Vision Transformer encoder, attention masking for missing modalities, coverage-adaptive masking for heterogeneous spatial coverage, and spectral continuity regularization for physically plausible reconstructions, and (3) a benchmark of six downstream tasks covering classification, regression, and segmentation. MG-MAE pretrained features outperform scratch baselines on all tasks and surpass both ImageNet-pretrained and vanilla MAE baselines by large margins. Data and code are available at https://huggingface.co/datasets/ayushprd/Moonstone and https://github.com/ayushprd/Moonstone .
Carlos Penarrubia, Antonio Rios-Vila, Eliseo Fuentes-Martinez +4cs.CV
Foundation models have transformed vision and language processing by providing rich, reusable representations that transfer across diverse tasks. Sheet music, as a visual encoding of musical language, lacks such a strong domain-specific backbone. We introduce MuSViT (Music Score Vision Transformer): the first foundation vision model for sheet music representation -- a ViT encoder pre-trained via Masked Autoencoders on 9.7 million pages from the IMSLP. To handle the complexity of real-world scores, we adopt a two-stage curriculum: a synthetic warm-up on typeset scores followed by large-scale training on the full IMSLP corpus. We evaluate MuSViT on four downstream tasks -- full-page and staff-level music score recognition, music symbol detection, and score difficulty classification -- under two scenarios: linear probing (frozen encoder) and fine-tuning. Under linear probing, MuSViT consistently outperforms modern vision encoders, revealing that general-purpose representations, regardless of scale, fall systematically short on the structured symbolic properties of musical notation. Under fine-tuning, MuSViT generally improves upon task-specific state-of-the-art methods. An additional embedding-transcription consistency analysis reveals that MuSViT encodes symbolic musical structure directly in its representation space -- unlike other encoders, whose embeddings do not correlate with music notation content. These results establish MuSViT as a foundation backbone for sheet music understanding.
Synthetic aperture radar automatic target recognition (SAR ATR) is critical for Earth observation and defense, but its practical deployment is constrained by scarce annotated training data. Self-supervised pre-training alleviates this label bottleneck, yet prevailing Transformer architectures incur prohibitive quadratic computational complexity, and conventional universal masking neglects the unique electromagnetic scattering properties intrinsic to SAR imagery. To address these limitations, we propose SAMBA (Scattering-Guided Bidirectional Mamba), an efficient self-supervised pre-training foundation model for SAR target interpretation. Our framework features three core innovations: (i) a linear-complexity Mamba encoder with a mid-sequence class token to mitigate computational bottlenecks; (ii) a three-level hierarchical Scattering-Guided Masked Autoencoder (SG-MAE) masking strategy guided by SAR physical priors, aligning the pretext task with SAR's intrinsic imaging mechanism; (iii) a lightweight SpatialMix feature interaction module to enhance cross-region feature fusion. We also design a two-stage cross-domain pre-training pipeline to optimize the overall pre-training process. Extensive evaluations demonstrate that SAMBA consistently delivers superior performance across all pre-training configurations, with substantially fewer parameters than both CNN and Transformer baselines. Compared with the default masking strategy in standard MAE, the proposed SG-MAE strategy further boosts the model's few-shot transfer capability. Benchmarking on seven downstream datasets covering classification and detection tasks shows SAMBA achieves state-of-the-art (SOTA) performance on most metrics, fully validating its robust generalizability across diverse SAR interpretation tasks. Source code and pre-trained weights are publicly available at https://github.com/mynswkk/SAMBA.
Single-cell RNA sequencing (scRNA-seq) clustering is essential for identifying cell types, but high dimensionality, sparsity, dropout, and technical noise hinder robust expression representation and cell graph construction. Existing masked autoencoders mainly use expression recovery for feature reconstruction, while graph clustering methods usually depend on fixed KNN graphs and do not feed recovered expression back into graph optimization. We propose scKDGM, a KAN-guided dynamic graph masked learning framework for scRNA-seq clustering. scKDGM uses graph-aware distribution preserving gene masking (GDP-Mask) to perturb cell identity, a KAN-based TAKGCN encoder to learn masked-view representations, mask-guided expression recovery to construct a dynamic graph, and cross-view contrastive learning to transfer recovery signals into topology updates. A ZINB loss models overdispersion and zero inflation. Experiments on 12 real scRNA-seq datasets show that scKDGM outperforms 10 baselines in average NMI and ARI.