Most biomedical publications show signs of LLM-assisted writing

Over the past several years, LLM-powered chatbots and agents have become widely used as a tool for academic writing. LLM-assisted writing can be valuable by removing language barriers but at the same time causes concerns about misconduct and fraud. To inform policy decisions, it is necessary to monitor the prevalence of LLM-altered texts in scholarly publications. Despite some recent progress in this direction, no existing method can produce reliable estimates. Here we suggest and validate a new unbiased approach to estimate LLM usage in a corpus of texts based on changing word frequencies. We apply our method to the full texts of open-access biomedical papers from Pubmed Central, and show that by the end of 2025, 89% of papers show excess of LLM-associated vocabulary. We also find that LLMs are twice as likely to be used when writing a paragraph in the Discussion section (68%) compared to a paragraph in the Methods section (32%), but even inside the Methods section, the overall prevalence of LLM usage is over 50%. We believe that our estimates are crucial to shape future guidelines and policies.

A Methodology for Investigating AI Patterns Prevalence in Software Repositories

As Artificial Intelligence(AI)-based applications take off, a clear understanding of AI patterns can uplift the quality of AI applications. Many AI patterns have been proposed in the literature; however, their prevalence in real-life code has not yet been validated. Understanding the actual use of those patterns in practice can clarify our understanding both of the significance of these patterns and their utility. In this paper, we present a methodology to a) identify relevant patterns by mining the literature and then to b) validate their presence and prevalence in actual code repositories using active learning. To that end, we identify 14 AI pattern classes by mining 44 published AI pattern-related sources. Then we use an active learning approach to determine the prevalence of the most common pattern class across 100 GitHub open AI repositories. Using prevalence estimation, we propose bounds on the accuracy of the occurrences. The model achieves 56\% accuracy and 55\% recall in an 8-way classification task, significantly outperforming the 11\% random-chance baseline. Furthermore, the prevalence estimation offers usable bounds for analyzing pattern applications. This methodology provides a robust foundation to start understanding how AI patterns are used in practice, a field that currently lacks empirical data.