Learning to Resolve Neutron Resonances with Fully Convolutional Neural Networks

This work investigates the feasibility of augmenting traditional R-Matrix codes with a robust machine learning framework for automatically detecting neutron resonances in transmission spectra. Neutron transmission data are often complex and noisy, making them difficult to analyze using traditional peak-identification methods. The state-of-the-art R-Matrix codes currently used by physicists to fit these data often depend on prior evaluations and require substantial manual effort. This preliminary study demonstrates a method for accelerating the post-experimental processing of neutron transmission data and reducing bias associated with dependence on prior evaluations. We employ a fully convolutional neural network to classify individual points as belonging to resonance or non-resonance regions in seven transmission spectra---two evaluated and five experimental. Although the model achieves classification accuracies in the range of 93\%, further analysis shows that this metric overstates its ability to generalize. Building on our prior analysis in PHYSOR 2026, we find that, despite the inclusion of additional training data, the method does not generalize reliably to previously unseen isotopes. To address these limitations, future work should evaluate whether a larger and more diverse training dataset can produce a generalizable model and should incorporate known physical characteristics of neutron resonances to improve model performance.

Multi-modal transformer for signal classification in nanopore blockade experiments

Nanopore devices have emerged as powerful tools for single-molecule sensing, with potential for rapid, portable diagnostics. They detect changes in ionic current as analytes enter nanometer-scale pores, providing a means of identifying diverse biomarkers from their characteristic signal patterns. However, these signals are highly complex, and reliably assigning them to specific molecules remains a major challenge. Here, we address this by introducing a multi-modal deep learning architecture that jointly processes multiple signal representations, including raw time-series data, wavelet-based images, and static feature vectors. Our approach surpasses existing methods by more than 10 percentage points on a 42-peptide benchmark and transfers to a 20-amino-acid dataset with near-perfect accuracy. The model integrates complementary information from these representations, with attention analysis showing that the time-series and wavelet-image inputs emphasize different features of the same event. Together, these results demonstrate the potential of machine learning to enable robust, high-accuracy molecular identification with nanopore sensors.

A comparative and critical study of EEGNet for fNIRS-driven cognitive load classification

Accurately classifying cognitive load from functional near-infrared spectroscopy (fNIRS) signals remains a significant challenge due to temporal variability, inter-subject differences, and sensitivity to preprocessing choices. This study provides a comprehensive evaluation of EEGNet for fNIRS-based cognitive load classification by systematically examining the effects of temporal segmentation strategies (overlapping vs. non-overlapping), window lengths (10s, 20s, 30s), feature extraction methods (Analysis of Variance (ANOVA), Principal Component Analysis (PCA), Fast Independent Component Analysis (FastICA)), learning rate configurations (fixed and adaptive), and evaluation protocols (random split vs. subject-independent (SI)). Results from random-split experiments show that overlapping segmentation, combined with smaller fixed learning rates (0.01-0.001), yields the highest accuracies, due to temporal redundancy and dense sampling of hemodynamic transitions. However, SI evaluation reveals a substantial drop in accuracy, demonstrating limited generalization to unseen participants. Under SI evaluation, non-overlapping segmentation outperformed overlapping windows, with the best accuracy of 56.11% achieved using PCA features with a 20-second window and a 0.1 learning rate. These findings indicate that eliminating temporal redundancy helps the model learn more robust and generalizable representations of cognitive load across individuals. Although adaptive learning rate strategy improved training stability, it did not surpass the performance of optimally selected fixed learning rates. The study highlights the critical role of segmentation strategy and learning rate selection in improving model generalization and identifies methodological considerations essential for developing reliable, real-time, and SI cognitive load classification systems using fNIRS.

New Fractional Ambiguity Function Integrated with CNN-Based Machine Learning for Signal Classification

A new fractional ambiguity function (NFrAF) derived from the fractional Fourier transform is introduced as a generalization of the classical ambiguity function. The fundamental analytical properties of the NFrAF, including symmetry, marginality, and Moyal type identities, are rigorously established. After verifying its ability to detect and localize monocomponent and multicomponent linear frequency modulated (LFM) signals, the NFrAF is integrated into a convolutional neural network based machine learning framework for signal classification. Owing to its superior time frequency resolution and localization, the NFrAF provides a more informative input representation than conventional methods such as the spectrogram and classical ambiguity function. Experimental results on simulated datasets demonstrate consistent improvements in classification accuracy, highlighting the effectiveness of the proposed representation for data driven signal analysis.