Counting Animals in Camera-Traps Image Sequences without Count Labels: Winning Solution to the iWildCam 2021 Challenge

Camera traps have become an essential tool for wildlife monitoring, motivating the development of computer vision methods for the automated extraction of information from these data. While most prior work has focused on species identification, many ecological applications also require estimating the number of unique individuals appearing across short image sequences. This task is particularly challenging because camera traps typically acquire bursts of images at approximately one frame per second, creating large temporal discontinuities that may make conventional multi-object tracking methods unreliable, and because manually collecting individual count annotations is prohibitively expensive. In this work, we describe the winning solution to the iWildCam 2021 Challenge, which introduced a benchmark for counting animals at the sequence level under realistic annotation constraints where count annotations are unavailable for training. Our approach, MaxBoxCount, combines a strong species classification pipeline with a simple yet effective counting heuristic based on MegaDetector detections to estimate the number of unique individuals without requiring count annotations. Code is available at https://github.com/alcunha/iwildcam2021ufam.

ChiroEcho: extending automated bat vocalisation classification beyond the learned taxonomy

Bats are key indicators of ecosystem health and are protected throughout Europe, making reliable population monitoring a conservation priority. Their cryptic nocturnal lifestyle makes passive acoustic monitoring essential, yet automated identification remains difficult as echolocation calls vary with behaviour and environment and overlap among species. We present a deep learning framework that jointly predicts species and genus and combines genus predictions with geographic species distributions at inference. When only one species of a predicted genus occurs in a region, the framework can resolve species absent from the learned taxonomy. This reframes geographic information as a means of extending, rather than constraining, a classifier's effective taxonomy. Using recordings spanning 35 European bat species, we evaluate closed-set classification, examine the instability of performance estimates for sparsely represented species, and conduct a controlled held-out proof-of-principle experiment. The rare-species analysis shows how limited evaluation data can obscure species-level performance, while the held-out experiment shows that genus predictions and location can recover labels unavailable to the species head. Geographic resolution extends operational coverage from 35 to 41 of the 48 native European bat species, increasing coverage from 73% to 85%. To our knowledge, this is the broadest operational coverage reported for automated European bat classification. More broadly, the bat framework provides proof of principle for resolving unseen fine-grained classes by combining coarse predictions with transparent external constraints.

EcoVision: AI-Powered Drone Imaging for Salt Marsh Vegetation Monitoring and Dominance Mapping

High-resolution RGB imagery acquired from low-altitude UAV surveys was processed through a modular pipeline incorporating transformer-based semantic segmentation, connected-component vegetation extraction, fine-grained species classification using a ConvNeXt architecture, and grid-based dominance scoring at 2x2m resolution. The framework targeted two ecologically significant halophytic grasses, Spartina maritima and Puccinellia maritima, and was trained using a curated and manually annotated UAV imagery, along with biodiversity imagery sourced from publicly accessible datasets. In order to identify these plants from the imagery, our segmentation yielded reliable species masks (mean IoU = 0.56; pixel-level accuracy = 0.96), while object-level classification achieved very good discrimination (F1 = 0.99). Dominance estimates closely matched quadrat-based field surveys, with mean absolute differences below 8%, preserving fine-scale spatial structure under realistic survey conditions. The developed system, named EcoVision, establishes a practical foundation for scalable, high-resolution salt marsh monitoring, demonstrating how AI-driven workflows can translate pixel-level predictions into ecologically interpretable metrics.

Decoding Insect Song: A Multitask Semisupervised Orthoptera Bioacoustic Classifier

Passive acoustic monitoring holds great promise for ecological inference, yet existing automated tools are typically narrowly trained and non-transferable. We address these limitations with PULSE, a semi-supervised, multi-task framework for Orthoptera bioacoustics, combining weakly-supervised species classification, self-supervised learning on unlabelled field audio, and knowledge distillation from a general-purpose bioacoustic model. Our domain-adapted specialist model outperforms a state-of-the-art general model across all metrics (macro F1: 0.21 vs. 0.07; AUC: 0.74 vs. 0.45; AP: 0.32 vs. 0.19), with active learning further raising F1 to 0.34 and AUC to 0.84. Beyond classification, the learned embeddings encode ecologically meaningful structure, exposed through an interactive visualisation tool for ecological discovery.