Causal representation learning (CRL) aims to recover latent causal variables and their structural relations from high-dimensional observations. Existing CRL methods typically assume that all environments are defined over the same latent variables, or at least share a common latent representation space. We study a fragmented multi-client setting, where multiple clients interact with the same global latent causal system but each client only accesses and intervenes on a subset of the latent variables. In this regime, marginalizing unused latent variables induces bidirected edges, so a single client no longer admits a node-wise latent causal graph, and the global latent causal order must be recovered by assembling client-specific structural fragments. We propose \textbf{Jigsaw-CRL}, a framework for recovering global latent causal order from such fragmented interventions. Under soft interventions, differences between precision matrices across environments exhibit a low-rank structure governed by latent ancestor relations. This enables recovery, for each client, of a block partition, the corresponding block-level ancestral order, and latent subspaces, and then assembly of these fragments into the global node-level latent causal order. We establish identifiability guarantees, develop practical algorithms, and validate the framework on synthetic data. Our codes are available on https://anonymous.4open.science/r/code-for-Jigsaw-CRL-7B26
Causal discovery aims to understand the relationships between individual random variables. In many applications, such as brain imaging and climate modeling, it is more meaningful to consider interactions among groups of variables. Existing methods assume that knowledge of such groups or clusters is explicitly available when modeling interactions. However, in practice, these clusters as well as the causal relationships among them, are latent. In this paper, we present a novel approach based on variational inference to simultaneously infer both the latent clusters and causal structures. We learn an approximate posterior over clusters and graph-structure by considering variational distributions based on categorical and Bernoulli models respectively. We derive variational lower bounds and estimation techniques to learn variational and model parameters. The effectiveness of our proposed methods for cluster and causal discovery are demonstrated on both synthetic and real data sets.
Ranking data arise in scientific and machine learning applications, including recommendation systems, information retrieval, voting, marketing, and AI preference ranking from human feedback. Existing statistical work has primarily focused on inference tasks such as preference estimation, rank aggregation, and ranking prediction. However, generating realistic synthetic rankings from an observed population is important for privacy-preserving data sharing, benchmark construction, simulation, and uncertainty quantification. This task is challenging because rankings are high-dimensional combinatorial objects with non-Euclidean dependence structures, while ranking populations often exhibit substantial preference heterogeneity. We propose a framework for population-level generative modeling through a latent preference simplex embedding. It estimates a low-dimensional latent preference simplex through a likelihood-based ranking model, leverages flow matching to learn the population distribution of latent preferences, and generates new rankings through the fitted probabilistic ranking model. We show that ranking generation admits an oracle reduction to latent distribution learning and derive finite-sample generative guarantees that clarify how the number of items, ranking length, and latent dimension affect accuracy. Experiments on synthetic and real datasets demonstrate improved population-level fidelity and provide a statistically interpretable representation of preference heterogeneity.
Duong Bach, Hai Nguyen Hong, Cuong Docs.LG cs.AI stat.ML
Factorized generative models commonly regularize a latent style variable z_s by matching its marginal distribution to a fixed Gaussian prior and interpret this as evidence that the style representation is independent of class information. We show that this interpretation is incorrect. Matching only the marginal distribution places no constraint on the class-conditional distributions, allowing the latent style to remain highly predictive of the label despite appearing perfectly Gaussian in aggregate. We derive an exact decomposition showing that this mismatch is one of four conditions required for factorized sampling, and demonstrate that eliminating it is necessary but not sufficient to obtain the intended factorization. Empirically, our case-study model and four representative latent baselines achieve near-zero global MMD while still allowing a linear probe to recover class labels with 74%--100% accuracy (10% chance level). Our model reaches 99.15% clustering accuracy, whereas externally evaluated class-conditional generation succeeds only 16% of the time. This leakage remains under six independent perturbations involving model capacity, curriculum, prior geometry, and supervision across two datasets. Four mitigation strategies reduce probe accuracy to 21%--46%, although they leave within-class dependence largely unchanged. A post-hoc conditional prior improves externally evaluated class generation to 0.97 on MNIST without retraining but reaches only 0.41 on CIFAR-10, while an empirical style bank achieves 0.88 on CIFAR-10. These results demonstrate that no divergence computed solely on the marginal distribution of the style latent can certify independence from class labels, and that reporting marginal statistics alone does not verify the property commonly claimed in factorized generative models.
A central aim of unsupervised learning is to uncover latent factors that explain dependencies among observations. Probabilistic models typically achieve this by introducing multiple latent variables linked through a graph of conditional relationships, with distributional parameters and their dependence learnt from data. Learning relies either on distributional choices that allow tractable belief propagation, or on approximations that scale poorly with model size and complexity. We build on the recently developed recognition-parametrised modelling paradigm to propose an alternative approach: RAMP, a method that implicitly defines latent structure by learning a flexible, nonlinear, amortised message-passing framework. We show that RAMP enables efficient likelihood-based recovery of latent-variable distributions within expressive nonlinear models acting on complex high-dimensional data.
Sparse-support uncertainty is usually quantified by treating the dictionary as known, an assumption that can produce overconfident, label-dependent conclusions when the dictionary is learned from latent sparse mixtures. Near collisions of coherent atoms, a test signal may identify the active physical group even though the training data cannot distinguish the physical rays within it. We develop inference for active physical rays, unit atoms modulo sign, after latent dictionary learning. In a fixed-dimensional Gaussian train-test experiment, we retain all dictionaries compatible with a robust training-moment region, profile the test representation over them, and project surviving configurations onto a permutation-invariant support space. The resulting confidence correspondence can report cross-sheet inconclusiveness, group resolution with child ambiguity, or fine-support resolution. We characterize both its statistical cost and decision-theoretic benefit. Residual block orientation first affects the latent training density at cubic order, yielding information of order $s^6$, where $s$ is the within-block collision scale. The correspondence provides high-probability-over-training conditional test coverage, with resolution governed separately by parent detectability, test-time support separation, and learned-dictionary orientation. In the resolved fixed-shell regime, its projective Hausdorff diameter contracts at the minimax-optimal rate $s \wedge (\sqrt{N}s^2)^{-1}$, up to constants. A restricted-task theorem further determines when coefficient asymmetry allows test replication to supplement training information and when calibration uncertainty remains irreducible. The framework thus yields honest, resolution-adaptive support statements and guides the allocation of training versus test measurements.
Variational Autoencoders (VAEs) frequently suffer from posterior collapse, a failure mode in which the approximate posterior converges to the prior, rendering the latent code uninformative. Despite extensive research, a unified account of why collapse occurs has remained an open question. We identify and formalize two logically independent but coupled causes. \emph{Gradient imbalance} occurs when the decoder's reconstruction signal vanishes faster than the $\mathbb{KL}$ regularization pressure as the posterior widens. \emph{Information gap} occurs when the stochastic sampling step discards a substantial fraction of the encoder's computed representation, attenuating decoder sensitivity and making collapse inexpensive. Both causes share the same collapse trajectory, and we show that the information gap is algebraically equivalent to mismatch between the aggregate posterior and the prior, unifying two pathologies. Subsequently, we introduce $λ$-VAE, which resolves both causes through a single modification to the reparameterization step: the sampling noise is scaled by per-dimension exponent, while the $\mathbb{KL}$ penalty retains the original posterior variance. This asymmetry shifts the stable training attractor away from the degenerate collapsed state, driving all latent dimensions toward the same equilibrium -- a mechanism we term \emph{variance equalization}. A closed-form optimal exponent per dimension follows from a net information gain objective, with a single hyperparameter controlling the reconstruction-generation tradeoff. We validate on standard benchmarks (Binary MNIST, Binary Omniglot, CIFAR-10, CelebA-64), showing consistent reductions in collapsed dimensions, information capacity gains of up to $2.8\times$ nats, and reconstruction quality improvements of up to $+0.33$ BPD.
Théo Saulus, Simon Lacoste-Julien, Dhanya Sridharcs.LG
Causal abstractions formalize when a high-level structural causal model (SCM) captures the interventional behavior of a lower-level SCM. Existing applications of this notion largely follow a hypothesis-testing paradigm: an expert proposes a candidate high-level model and then evaluates if the low-level system implements it. We study the complementary problem of learning a high-level model directly from low-level measurements. Our contributions leverage hypotheses from low-rank causal discovery, and can be summarized as follows: (1) we show that observations generated by a low-rank graph induce latents that form a causal abstraction, (2) we provide identifiability results about these latents, and (3) we propose a practical objective to learn this high-level SCM.
Yordan P. Raykov, Hengrui Luo, Justin D. Strait +1stat.ME cs.LG math.ST
Multi-cause observational studies contain information about unmeasured confounding through the dependence structure among causes. However, literal imputation of the unobserved confounder is often more complex than learning a lower-dimensional substitute score that preserves the shared assignment variation needed for stable causal adjustment. The deconfounder (Wang and Blei, 2019) and related substitute confounder methods exploit this idea, but flexible assignment models can fit the joint distribution of the causes while producing scores that over-encode the treatment vector, collapse overlap, or capture single-cause variation. We develop a Bayesian factor assignment framework for learning sparse substitute confounders that retain coarse multi-cause dependence with shrinkage priors. The theory is stated at the level of posterior concentration, factor score contraction, and overlap-preserving assignment geometry and therefore does not rely on a particular shrinkage prior. Under these conditions, the proposed regression-adjusted estimators are consistent for mean potential outcomes when the corresponding latent variable identification assumptions hold. Shrinkage priors provide a natural tool for latent structural learning: they favour low-dimensional factors supported by multiple causes, discourage effectively single-cause factors, and induce an ordering of the latent factors through progressive shrinkage. Synthetic experiments illustrate the roles of signal strength, outcome validity, and geometry-aware regularization. In an Alzheimer's Disease Neuroimaging Initiative (ADNI) baseline analysis, sparse substitute scores recover much of the adjustment obtained by directly conditioning on invasive cerebrospinal-fluid biomarkers, while collapse diagnostics identify when fitted factors reduce to individual observed measurements.
Reliable generalization in conditional latent variable models requires understanding both identifiability and extrapolation: how observed variation across attributes determines latent structure, and how that structure determines distributions at unseen attributes. However, existing identifiability and extrapolation guarantees are largely model-specific, with separate analyses in nonlinear ICA, causal representation learning, perturbation modeling, and related conditional latent variable models. We introduce concept modulation models (CMMs), an attribute-indexed class of conditional generative models with structure $A\to Λ\to C\to X$, where attributes select modulators, modulators induce latent concept laws, and concepts generate observed features. CMMs lift transition-based identifiability to conditional settings by showing that feature agreement on observed attributes induces a latent concept transition constrained by the CMM class. We express these constraints through attribute potentials, log-density ratios between attribute-conditioned concept laws, separating the generic lifting step from model-specific rigidity arguments. The same potentials control extrapolation: agreement at unseen attributes holds exactly when the transported attribute-potential identities extend to those attributes. This yields algebraic extrapolation criteria, identifies the common potential-based proof objects behind several existing identifiability and extrapolation results, and, when combined with the model-specific rigidity arguments in those works, recovers their stated conclusions.
Variational inference (VI) is a core engine of modern AI, enabling scalable approximate Bayesian learning and uncertainty-aware training of large probabilistic and generative models. In this paper, we propose Structured Nonparametric Variational Inference (SN-VI), a novel framework for modeling complex dependencies among latent variables in posterior approximation, leveraging multivariate spline techniques. Unlike traditional methods that rely on the mean-field assumption, SN-VI preserves intricate latent variable dependencies, providing a flexible and accurate approximation of posteriors with arbitrary shapes. We establish rigorous theoretical guarantees, including the derivation of the lower bound for the variational objective and proof of asymptotic consistency in posterior estimation. To facilitate practical implementation, we develop an algorithm that automatically identifies dependent latent variables and their underlying dependence structure, without requiring manual specification. Simulation studies validate the effectiveness of SN-VI in approximating posterior distributions with bounded support and complex dependencies. The proposed method has been successfully applied to high-dimensional structured data, including computer vision datasets and spatial transcriptomics. In these applications, SN-VI demonstrates improved generative model performance and effectively uncovers coupled biological signals through the learned dependency structure.