Subzero matrix completion for sparse data analysis: large-scale learning of latent low-rank structure

We investigate when a sparse nonnegative matrix can be recovered from a real-valued matrix of much lower rank by zeroing out its negative elements. The potential for such decompositions suggests a mathematical connection between sparsity and rank; we analyze a number of sparse matrices with this latent low-rank structure and use them to illustrate the geometric origins of this connection. Previous algorithms have discovered these decompositions via an alternating minimization over the factors of a low-rank matrix, but to do so, they have also needed to compute and store another matrix, neither sparse nor low-rank, that is the size of their product. We develop a stochastic, alternating least-squares algorithm that operates on smaller blocks of this dense matrix and scales as a result to much larger problems. We also show how to further accelerate this algorithm with sparse optimizations and customized CUDA kernels. As one example, we use the algorithm to analyze the sparse matrix of synaptic weights for the recently published $\textit{Drosphilia}$ connectome. The nonzero elements of this matrix, with 139,255 rows and columns, record the number of synapses between cells in the nervous system of a female fruit fly. Despite a slowly decaying spectrum of singular values, this matrix exhibits a latent low-rank structure that is predictive of cell categories across multiple levels of specificity.

Graph-Based Correlation Matrix Generation: A Convex Optimization Approach

This work addresses the generation of theoretical correlation matrices with prescribed sparsity patterns associated to graph structures. We propose a novel convex optimization framework in which an initial matrix is projected onto an elliptope under a positive semidefiniteness constraint. Several numerical schemes are implemented and compared. The problem falls within the broader class of matrix completion, where off-diagonal entries corresponding to absent edges are fixed to zero and diagonal entries are fixed to one. Beyond this structural constraint, the approach offers greater flexibility than existing methods by allowing control over the mean of the off-diagonal entry distribution, enabling the generation of correlation matrices that better reflect realistic data. This procedure is not designed to yield a uniform distribution over the feasible set; rather, it provides a principled and tunable way to construct correlation matrices suitable for benchmarking statistical methods for graphical model inference. Theoretical guarantees on the existence of solutions are established, both in the general setting and under the additional mean constraint. Simulation studies illustrate the properties of the generated matrices with respect to graph structure. The methodology is applied to two real-world datasets from neuroscience and finance, and a comparison with GAN-based correlation matrix generation is provided.

Graph-Regularized Low-Rank Matrix Completion by Variable Projection

We address the low-rank matrix completion problem by incorporating graph regularization into the existing Riemannian Trust-Region Matrix Completion (RTRMC) framework. The latter uses the geometry of the low-rank constraint to remodel the problem as an unconstrained optimization problem on a single Grassmann manifold. Our approach, named Graph-Regularized RTRMC (GR-RTRMC), exploits the inherent relationships between rows and columns of the matrix. By using these relationships, we aim to improve the accuracy and robustness of matrix completion, particularly in scenarios where the underlying data exhibits strong correlations between rows or columns.

Latent Structural Categorical Matrix Completion with Application to Quasispecies Analysis

Matrix completion has been extensively studied for real-valued data, but existing methods are often limited in handling categorical variables. We propose LCMC, a double-loop optimization framework for categorical matrix completion via latent factorization based on a binary tensor representation. In this setting, each categorical entry is encoded as a one-hot vector along a third tensor mode, thereby preserving its discrete, non-ordinal nature. The outer loop adaptively estimates the latent dimension by iteratively updating it with feedback from the inner loop, while the inner loop reconstructs the categorical matrix through tensor factorization, supported by a corresponding theoretical analysis. To further improve scalability and robustness, we introduce enhancements including a split-merge-refine strategy and an adaptive data reduction technique. Experiments on synthetic and real-world datasets in viral quasispecies reconstruction, demonstrate that LCMC achieves superior accuracy and efficiency compared to existing methods.

Low-rank Distributional Matrix Completion

We study a distributional generalization of the matrix completion problem in which each entry of the target matrix is a probability distribution rather than a scalar. In this setting, only a subset of matrix entries is observed, and even for observed entries, the underlying distributions are not directly accessible; instead, we observe finitely many samples drawn from them. To represent distributional entries, we employ kernel mean embeddings and introduce a notion of Tucker rank for distribution-valued matrices to capture their low-rank structure. The infinite-dimensional nature of kernel embeddings poses significant methodological challenges. To address this, we introduce functional unfolding operators that link the proposed distributional low-rank structure to the classical Tucker rank for finite-dimensional tensors. Based on this framework, we propose a novel estimator for distributional matrix completion. We establish non-asymptotic error bounds that characterize the statistical performance of the estimator. Extensive experiments on synthetic data and a real-world application demonstrate the effectiveness of the proposed method.

Active multiple matrix completion with adaptive confidence sets

In this work, we formulate a new multi-task active learning setting in which the learner's goal is to solve multiple matrix completion problems simultaneously. At each round, the learner can choose from which matrix it receives a sample from an entry drawn uniformly at random. Our main practical motivation is market segmentation, where the matrices represent different regions with different preferences of the customers. The challenge in this setting is that each of the matrices can be of a different size and also of a different rank which is unknown. We provide and analyze a new algorithm, MAlocate that is able to adapt to the unknown ranks of the different matrices. We then give a lower-bound showing that our strategy is minimax-optimal and demonstrate its performance with synthetic experiments.