Root cause analysis via difference graph discovery from linear time-series data

Root cause analysis aims to identify the mechanisms responsible for anomalies in complex dynamical systems. In this paper, we study root cause analysis in linear time-series through the lens of difference graph discovery. We focus on effect-defying root causes, corresponding to variables whose causal coefficients change between a normal and an anomalous regime. We formalize this problem using linear discrete-time dynamic structural causal models and adapt several methods originally introduced for discovering difference graphs between two populations to the time-series setting, where the two populations are replaced by a normal and an anomalous regime. We first evaluate the proposed approaches on simulated data, and then demonstrate their practical relevance on real-world datasets from IT monitoring and intensive care monitoring. Our results show how difference graph discovery can help localize causal mechanisms responsible for anomalous behavior.

Conformal Changepoint Localization and Root Cause Analysis with Corrupted Observations

Detecting when the statistical behavior of an engineered system changes, and identifying which component is responsible, are core problems in the monitoring of telecommunication networks, robotic platforms, security infrastructure, and multi-agent systems. In safety- and mission-critical deployments, such decisions must be accompanied by statistical reliability guarantees rather than by point estimates alone. Conformal changepoint localization (CONCH) and conformal root cause analysis (CROC) meet this need by returning confidence sets that contain the true changepoint, or the true root-cause stream, with a user-specified probability, without parametric assumptions on the data-generating process. In practice, however, observations are frequently corrupted, e.g., by outliers, sensor faults, or adversarial perturbations. While the finite-sample coverage of these procedures is preserved under contamination, the resulting confidence sets can become uninformatively large. Adopting a Huber-type contamination model, this paper proposes weighted CONCH (W-CONCH) and weighted CROC (W-CROC), which downweight observations that are likely to be corrupted with the goal of reducing confidence set size when data may be corrupted. The weighting mechanism, derived from a formal bound on the unknown corrupted data densities, leverages pre-existing second-order classifier-based uncertainty signals, such as those produced by evidential deep learning or Bayesian learning. W-CONCH and W-CROC are further generalized by introducing a meta-learning procedure for the weights that optimizes a differentiable surrogate of the confidence set size. Experiments on image-based and real-world changepoint and root-cause benchmarks show that uncertainty-based weighting substantially reduces confidence set size while maintaining the target coverage.

Root Cause Analysis with Latent Confounders using Partial Ancestral Graphs

Finding the source of failures, known as Root Cause Analysis (RCA), is essential for identifying the root causes of anomalies and maintaining the reliability of complex systems. While causal theory has advanced data-driven RCA, existing frameworks assume causal sufficiency, failing to account for the unobserved latent variables prevalent in real-world environments. To address this gap, we propose PAG-RCA. This framework models system failures as parametric interventions over Partial Ancestral Graphs (PAGs) to perform RCA in the presence of latent variables. We use standard causal identification algorithms to find the source of failures by quantifying causal effects over the PAG. When an effect is identifiable, candidate root causes are ranked based on their exact intervention effects. When effects are structurally unidentifiable, our framework (for the first time in the RCA literature) integrates partial identification to evaluate and score candidates using analytical causal bounds. By integrating latent variables and partial identification at once our framework ensures robust RCA even under data scarcity and latent-variable scenarios where traditional methods degrade. Evaluations on synthetic data, microservice anomaly benchmarks and power-grid cascading failures demonstrate that PAG-RCA consistently outperforms state-of-the-art data-driven baselines. By improving data-driven RCA performance under data scarcity, this methodology advances reliable automated diagnostics in partially observable complex networks.

StableRCA: Robust Graph-Agnostic Mechanism-Level Root Cause Analysis

Root-Cause Analysis (RCA) seeks to identify the variables responsible for abnormal system behavior in complex domains such as manufacturing, cloud computing, and healthcare. Existing approaches face a critical bottleneck: graph-based causal methods can identify intervention targets but typically require a known or accurately estimated causal graph, while graph-free statistical methods either localize marginal anomalies rather than structural causes, or rely on restrictive assumptions about graph structure or functional form. We propose StableRCA, a local mechanism-level RCA framework that avoids global graph discovery by estimating local Markov boundaries and detecting conditional distribution shifts within them. Leveraging the Independent Causal Mechanism principle, we show that intervention targets can be identified with probability converging exponentially in sample size under faithful Markov boundary recovery and non-degenerate mechanism shifts. Experiments on synthetic benchmarks and five real-world datasets demonstrate that StableRCA is robust to graph misspecification, effective under multiple intervention targets, scalable to large systems, and reliable across diverse application domains. Code is available at: https://anonymous.4open.science/r/StableRCA-E362