Lightweight Adaptation of EEG Foundation Models for Stroke Motor Imagery Decoding: Domain Shift and Subject-Level Robustness

Motor imagery (MI) electroencephalography (EEG) decoding could support post-stroke rehabilitation, but models developed on healthy cohorts may not transfer reliably to pathological EEG. We evaluated whether Low-Rank Adaptation (LoRA) can efficiently adapt three pretrained EEG foundation models (i.e., LaBraM-base, REVE-base, and REVE-large) for binary left- versus right-hand MI decoding. Frozen-backbone head-only baselines and LoRA adaptation were evaluated using subject-wise five-fold cross-validation on the PhysioNet EEG Motor Movement/Imagery Dataset and a binary subset of the UET175 dataset comprising 30 stroke participants. On EEGMMIDB, LoRA increased accuracy to 0.822 for LaBraM-base and 0.957 for REVE-base. On UET175, all head-only models performed near chance. With LoRA, LaBraM-base remained near chance (0.499$\pm$0.009), whereas REVE-base reached 0.847$\pm$0.194 and outperformed REVE-large (0.806$\pm$0.178), indicating that increased model capacity alone did not improve stroke-domain adaptation. The strongest stroke configuration, REVE-base LoRA, was further evaluated using within-cohort leave-one-subject-out cross-validation (LOOCV), showing 0.952 mean accuracy, but subject-wise accuracy ranged from 0.586 to 1.000, revealing a small low-performing tail. Zero-shot transfer from EEGMMIDB to UET175 remained near chance (0.464$\pm$0.072). These findings show that healthy-benchmark performance does not ensure transfer to stroke EEG. Translation of EEG foundation models to pseudo-online or real-time rehabilitation BCIs should therefore include target-domain adaptation and subject-level assessment of temporal informativeness, spatial sensitivity, and physiological discriminability.

Multi-Feature Riemannian Hypergraph for Online Test-Time Adaptation of Motor Imagery Brain-Computer Interface

In clinical motor imagery brain-computer interface (MI-BCI) decoding, cross-day transferability and online operation remain two critical challenges. Hypergraphs can improve transferability by capturing higher-order sample relationships, yet existing hypergraph-based methods for online emotion recognition neglect the cross-day benefits of Riemannian geometry widely adopted in EEG transfer learning. To bridge this gap, we propose the Multi-feature Riemannian Hypergraph (MRieHy), a framework tailored for online test-time adaptation in MI-BCI decoding that leverages Riemannian geometry to strengthen cross-day transferability. MRieHy first computes Riemannian means of covariance matrices from cross-day training data to align multi-day distributions. It then constructs a hypergraph over covariance matrices using Riemannian distance, complemented by a second hypergraph over deep features built with cosine similarity. The two hypergraphs are fused via adaptively learned combination weights, jointly optimized with the label projection matrices. During online testing, MRieHy maintains a first-in-first-out buffer of recent samples, performs Riemannian alignment on the buffered data, and decodes with the learned hypergraph. Extensive experiments on a private four-class ECoG dataset and two public four-class EEG datasets validate that MRieHy achieves notable performance gains over state-of-the-art baselines.

EEG Decoding Using CNN and LSTM Network

Motor imagery (MI) brain--computer interfaces (BCIs) have emerged as a promising approach for establishing flexible communication pathways between the human brain and external devices , particularly for individuals affected by stroke or neurodegenerative disorders. Reliable decoding of motor-imagery electroencephalography (MI-EEG) remains challenging because EEG recordings contain substantial noise and exhibit complex, weakly informative relationships with the underlying brain activity. Although deep learning provides an effective means of learning representations directly from EEG signals, its application to MI-EEG feature learning remains comparatively limited. This study introduces a hybrid deep-learning architecture that integrates a convolutional neural network (CNN) with a bidirectional long short-term memory (bi-LSTM) network. The CNN is used to learn high-level spatial and temporal representations directly from raw MI-EEG recordings, whereas the bi-LSTM models temporal dependencies and relationships among the extracted features. The proposed approach is evaluated using both a publicly available dataset and a privately acquired dataset obtained with an EEG acquisition system. The experimental results indicate that the CNN\&bi-LSTM architecture provides robust performance for both two- and three-class motor-imagery classification and demonstrates promising subject-independent decoding capability across the evaluated methods.

ATCNet-CIAM for Multi-Session Motor Imagery EEG Signal Classification

Motor imagery (MI)-based electroencephalography is widely used in non-invasive brain--computer interfaces (BCIs), but robust decoding remains challenging due to inter-subject variability and cross-session non-stationarity. This work proposes ATCNet-CIAM, an enhanced attention temporal convolutional network that integrates a lightweight channel-integrated attention module (CIAM) into the ATCNet framework to improve channel-spatial feature representation for MI decoding. The proposed model is evaluated on BCI Competition IV-2a, BCI Competition IV-2b, and the multi-day WBCIC-MI dataset under standard, within-session, and cross-session protocols. Experimental results show that ATCNet-CIAM achieves 86.32% accuracy on BCI IV-2a and 87.96% on BCI IV-2b under the standard protocol, while reaching 89.46% and 83.64% in the within-session WBCIC-MI on 2C and 3C, respectively. The proposed framework consistently improves classification stability and robustness under session-varying conditions, and ablation study confirms the complementary contribution of the proposed architectural components.

Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space

Robust EEG motor imagery decoding remains limited by strong inter-individual variability, making it difficult to identify pipelines that generalize across users. We present a large-scale, standardized within-session benchmark of decoding pipelines across three public datasets: Cho2017 (52 subjects), PhysionetMI (109 subjects), and Zhou2016 (4 subjects). Using a common MOABB LeftRightImagery setting, two frequency bands (8-15 Hz and 8-30 Hz), and a broad combination of feature extraction, preprocessing, and classification steps, we analyzed 216,714 raw evaluation rows, which after structured aggregation yielded 44,928, 109,000, and 4,192 subject-level observations respectively. Covariance tangent-space projection (cov-tgsp) and Common Spatial Patterns (CSP) consistently defined the strongest methodological families, though their relative ordering was dataset-dependent. On Cho2017, the best family-level mean accuracy came from cov-tgsp in 8-30 Hz (0.712 +/- 0.140), whereas Zhou2016 favored CSP (0.832 +/- 0.121 in 8-15 Hz). These aggregate rankings concealed substantial subject-level heterogeneity: 42 distinct winning pipelines across 52 Cho2017 subjects, and 93 across 109 PhysionetMI subjects. We then used the benchmark as an empirical performance landscape for building compact portfolios of pipelines of size K. Several construction procedures were compared, including a ranking-based Top-K Mean heuristic and search-based strategies. Results were broadly consistent, with Top-K Mean giving the best trade-off. A single best global pipeline already retained 94.2% of the oracle in Cho2017 and 81.8% in PhysionetMI; at K = 12, oracle retention rose to 96.5% and 90.0%. The landscape is therefore subject-dependent, and this heterogeneity can be exploited through compact portfolios that make personalization more feasible.

Generative Augmentation for EEG Motor Imagery Classification: A Class-Conditional VAE with Cycle-Consistent Decoder Refinement

We investigate whether a generative model can supply useful synthetic motor-imagery (MI) electroencephalography (EEG) trials that improve the accuracy of independent downstream classifiers. We train a class-conditional variational autoencoder (CVAE) with an integrated latent classifier on the Zhou motor-imagery dataset, using the learned per-class prior as a generator: sampling the prior for a given label and decoding it into a synthetic, label-consistent signal. A constraint on the covariance matrix of the generated data encourages preservation of covariance structure, and the model is trained with a schedule that alternates ordinary VAE training with a decoder-focused phase that sharpens the generative pathway used for augmentation. We measure the effect of adding synthetic trials to the training set under two evaluation protocols -- within-user (pooled 60/20/20 split across subjects) and cross-user (leave-one-subject-out, LOSO) -- across four representative EEG classification pipelines: Common Spatial Patterns with Linear Discriminant Analysis (CSP+LDA), tangent-space features with a Support Vector Machine (TGSP+SVM), Minimum Distance to Riemannian Mean (MDM), and a neural network based on EEGNetv4 (henceforth EEGNet). Results are aggregated across independent augmentation draws, random seeds (within-user), or leave-one-subject-out folds (cross-user), with uncertainty reported as 95\% confidence intervals (Student's $t$-distribution) computed over per-seed/per-fold averages. We find that synthetic EEG from the CVAE is most credible as a source of class-structured, covariance-like data rather than as a substitute for real raw EEG: it can raise the point estimate for MDM, but the broader augmentation claim remains conservative -- observed gains are small and classifier-dependent.

Learning Residual Kinematic Corrections for Continuous Neural Decoding via Reinforcement Learning

Decoding continuous three-dimensional (3D) motor imagery (MI) using non-invasive electroencephalography (EEG)-based brain--computer interfaces (BCIs) remains challenging due to signal variability and residual decoding errors. Deep learning architectures such as convolutional neural network--long short-term memory (CNN--LSTM) models can capture spatial and temporal dynamics for continuous kinematic decoding; however, systematic residual errors persist in predicted trajectories. We propose a two-stage decoding framework that applies reinforcement learning (RL) to perform residual kinematic correction on the outputs of a CNN--LSTM decoder (CNN--LSTM--RL). The RL agent is trained offline without direct EEG input and instead operates on predicted kinematic trajectories to optimize movement accuracy relative to target trajectories. Decoding performance was quantified using Pearson correlation coefficients ($r$) and Root Mean Square Errors (RMSE) along the $x, y$, and $z$ axes. Compared to CNN--LSTM applied alone, CNN--LSTM--RL improved the mean correlation from $0.5076$ to $0.7181$ ($p = 0.0005$) in 2D and from $0.6420$ to $0.7780$ ($p = 0.0059$) in VR, with relative gains of $41.5\%$ and $21.2\%$, respectively. Correspondingly, RMSE was reduced from $0.0890$ to $0.0532$ (2D, $p < 0.0001$) and from $0.0714$ to $0.0441$ (VR, $p < 0.0001$), representing relative reductions of $40.2\%$ and $38.2\%$. These findings demonstrate that this scalable framework enhances 3D BCI MI decoding by correcting kinematic errors via offline residual RL without extra neural data, advancing neurorehabilitation, prosthetics, and virtual interaction.

A Physics-Inspired Classical Digital Twin of Cortical Dynamics: A Band-Stratified Metriplectic Port-Hamiltonian Neural Network Learned from Brain-Computer-Interface EEG

We present a physics-inspired classical digital twin of brain-computer- interface (BCI) data: a graph neural network constrained to a band-stratified, metriplectic port-Hamiltonian form, with parameters learned from scalp EEG recorded during rest and motor imagery. The port-Hamiltonian structure is a modelling choice - it buys passivity, a certified steady-state power balance, and a clean separation of storage, routing and dissipation - not a claim about what the brain is. The state pairs each channel's instantaneous phase with its angular frequency, and stored energy decomposes over the five canonical frequency bands. A phase-locking prior measured from the same recordings gates the learned connectome, and a metriplectic formulation places the twin at a non- equilibrium steady state sustained by a metabolic port. Fitted to $1{,}109{,}250$ phasor samples from the PhysioNet EEG Motor Movement/Imagery database under a leakage-free split, the twin reaches a held-out reconstruction error of $1.30\times10^{-4}$. Scored free-running against invariants it did not author, the verdict is mixed: it reproduces near-critical avalanche branching ($σ\approx1$) but not the aperiodic $1/f$ slope or the long-range temporal correlations of the recordings. Skew-symmetry and non-negative dissipation hold by construction rather than by penalty, making the twin a structure-preserving substrate on which closed-loop neuromodulation can be designed and tested.

Stacked LoRA for Subject-Adaptive EEG Foundation Models in Motor Imagery Decoding

Electroencephalography (EEG) decoding for brain-computer interfaces (BCIs) faces a major challenge: substantial inter-subject variability limits effective cross-subject generalization. Consequently, practical systems still rely largely on subject-specific models trained from scratch and requiring individual recalibration. EEG foundation models have recently emerged as a promising alternative; however, even large pretrained models cannot simply be used as fixed feature extractors and still require additional adaptation before they can be reliably applied to downstream tasks. In this work, we address this challenge through targeted adaptation strategies. Building on recent EEG foundation models such as REVE, LaBraM, and LUNA, we examine the impact of different low-rank adaptation strategies on motor imagery classification. We propose a framework that structurally decouples subject-invariant knowledge from subject-specific neural signatures: the low-rank update at each adapted layer is split into a Global adapter, trained jointly across all subjects, and Subject-Specific adapters, each absorbing individual variability. To assess the contribution of each path, we compare three adaptation strategies: (i) subject-specific LoRA (ii) global LoRA and (iii) stacked LoRA, combining both Global and Subject Specific adapters. Experiments on BCI Competition IV-2a, PhysioNet Motor Imagery, and the clinical Zuo2025 benchmark show that Stacked LoRA effectively mitigates inter-subject variability, achieving the best accuracy in the large majority of backbone and dataset combinations. Our analysis further reveals that the optimal balance between the global and subject-specific paths depends on the target population: a shared adapter is sufficient for large, diverse cohorts, whereas subject-specific adaptation is decisive under the high inter-session variability of clinical recordings.

Temporal Feature Extractors in EEG Foundation Models: A Controlled Comparison Including a Pretrained Time-Series Model

Electroencephalography (EEG) foundation models aim to learn generalizable representations from large-scale brain recordings. However, the role of temporal feature extractors and whether pretrained time-series foundation models (TSFMs) can be effectively transferred to this setting remains underexplored. We conduct a controlled comparison of three temporal feature extraction strategies, including a linear baseline, a convolutional encoder, and a frozen pretrained TSFM (MOMENT), within a unified EEG foundation model. We evaluate their impact on representation quality using two downstream tasks: motor imagery and emotion recognition. Results reveal different trends across the evaluated benchmarks. On the motor imagery dataset, simple temporal representations perform competitively, whereas the emotion dataset benefits from richer temporal modeling. Although not specifically adapted to EEG, the pretrained TSFM serves as an effective temporal feature extractor, suggesting that general-purpose time-series representations can be transferred as frozen temporal feature extractors within EEG foundation models.

Average Rankings Mask Per-Subject Optimality: A Friedman-Nemenyi Benchmark of EEG Motor-Imagery BCI Decoders

Electroencephalography (EEG) is the dominant non-invasive modality for brain-computer interfaces (BCIs), yet reliable decoding of motor imagery is hampered by inter- and intra-individual variability. A recurring claim is that one decoding pipeline, most often a spatial or Riemannian method, is broadly preferable. We test the weakest version of that claim under the most favourable conditions. Using the Mother of All BCI Benchmarks (MOABB) framework, we evaluated 1,056 decoding configurations (feature extractor x scaler x classifier), >340,000 subject-level model fits, across three public left-versus-right motor-imagery datasets (PhysionetMI, 109 participants; Cho2017, 52; Zhou2016, 4) and two frequency bands (8-15 Hz, 8-30 Hz). Every model is fit and tested within a single session of a single participant, the easiest regime, giving every pipeline its best chance. We apply the statistics standard for multi-classifier comparison: Friedman omnibus tests, Nemenyi critical-difference analysis and Wilcoxon signed-rank tests with effect sizes. Covariance tangent-space projection (cov-tgsp) and Common Spatial Patterns (CSP) are the strongest families, but their ordering is dataset-dependent and, on the largest and most heterogeneous cohort (PhysionetMI), statistically indistinguishable (Nemenyi p = 0.27; Kendall's W = 0.11). At the individual level the single best pipeline is optimal for only 35% of PhysionetMI participants, and nonlinear descriptors are best for roughly one third; matching pipeline to participant adds about seven accuracy points over the best fixed choice. The ranking is not an artefact of dimensionality, and classifier and scaler choices are secondary to the feature representation. Even in the easiest regime, no single pipeline dominates: a lower bound on the personalization problem and a quantitative case for participant-aware model selection rather than a universal decoder.

Overcoming the BCI Calibration Bottleneck: A Clinically-Grounded Architecture using Riemannian Alignment and Stochastic Weight Averaging

Brain-Computer Interfaces (BCIs) face a severe calibration bottleneck due to cross-subject spatial covariance shifts and physiological artifacts. To enable zero-calibration BCI, a deep learning pipeline was engineered combining Per-Session Independent Component Analysis, Riemannian Euclidean Alignment, and EEGNet stabilized by Stochastic Weight Averaging (SWA). Evaluated on the strict MOABB BNCI2014-001 benchmark, the proposed architecture successfully isolates true sensorimotor rhythms. For the primary case study (Subject 1), a clinically robust SWA stable accuracy of 90.97% (AUC: 0.976, Cohen's $κ$: 0.819) was achieved. Furthermore, expanded 9-fold Leave-One-Subject-Out (LOSO) cross-validation yielded a globally stable mean accuracy of 74.31%, proving hardware-agnostic zero-shot efficacy for binary motor imagery.

Learning aligned EEG representations with subject-specific encoders

Cross-subject EEG decoding promises more training data, but it also exposes neural networks to strong inter-subject distribution shifts. We study whether task supervision and architecture alone can learn subject-aligned representations. We replace a shared EEG encoder with subject-specific encoders followed by a common classifier, and compare this hybrid model with standard EEGNet, AttentionBaseNet, and CTNet baselines with Euclidean Alignment (EA) on four motor-imagery datasets. EA improves shared encoders by recentering subject covariances, but the hybrid encoder largely internalises this role: validation-loss curves and latent-distance analyses change little when EA is removed. Subject-specific heads increase class distinctiveness and place each subject close to its own latent manifold, improving most subjects while leaving a method-sensitive subset. These results support subject-specific encoders as a learned alignment mechanism for EEG decoding and identify head selection for unseen subjects as the remaining bottleneck.